Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K8B87_RS08775 Genome accession   NZ_CP082773
Coordinates   1867026..1867655 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O99:H6 strain CU42ET-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1862026..1872655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B87_RS08755 (K8B87_08750) ycbZ 1862426..1864186 (-) 1761 WP_087602425.1 Lon protease family protein -
  K8B87_RS08760 (K8B87_08755) matP 1864372..1864824 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K8B87_RS08765 (K8B87_08760) ompA 1864902..1865942 (-) 1041 WP_001682780.1 porin OmpA -
  K8B87_RS08770 (K8B87_08765) sulA 1866298..1866807 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  K8B87_RS08775 (K8B87_08770) sxy/tfoX 1867026..1867655 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K8B87_RS08780 (K8B87_08775) yccS 1867618..1869780 (-) 2163 WP_122986686.1 YccS family putative transporter -
  K8B87_RS08785 (K8B87_08780) yccF 1869790..1870236 (-) 447 WP_001261236.1 YccF domain-containing protein -
  K8B87_RS08790 (K8B87_08785) helD 1870359..1872413 (+) 2055 WP_024008972.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=601968 K8B87_RS08775 WP_000839153.1 1867026..1867655(+) (sxy/tfoX) [Escherichia coli O99:H6 strain CU42ET-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=601968 K8B87_RS08775 WP_000839153.1 1867026..1867655(+) (sxy/tfoX) [Escherichia coli O99:H6 strain CU42ET-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1