Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NF668_RS06250 Genome accession   NZ_CP098925
Coordinates   1431179..1431787 (+) Length   202 a.a.
NCBI ID   WP_012457812.1    Uniprot ID   B2RJ07
Organism   Porphyromonas gingivalis strain grey     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1426179..1436787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF668_RS06225 (NF668_06210) - 1426525..1427748 (-) 1224 WP_301556838.1 site-specific integrase -
  NF668_RS06235 (NF668_06220) - 1428408..1429538 (-) 1131 WP_301556839.1 ISAs1 family transposase -
  NF668_RS06240 (NF668_06225) - 1429571..1429693 (-) 123 WP_301557535.1 DUF1661 domain-containing protein -
  NF668_RS11200 - 1429662..1429970 (+) 309 WP_363324421.1 DUF1661 domain-containing protein -
  NF668_RS06245 (NF668_06230) - 1430196..1430741 (+) 546 Protein_1242 transposase -
  NF668_RS06250 (NF668_06235) ruvA 1431179..1431787 (+) 609 WP_012457812.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21484.90 Da        Isoelectric Point: 5.9635

>NTDB_id=601412 NF668_RS06250 WP_012457812.1 1431179..1431787(+) (ruvA) [Porphyromonas gingivalis strain grey]
MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGLIWITQLIREDAHLLYGFSTKEERTLFGQLTSVSGV
GPTTARLILSSYAPQELAALITTGQADALKAVKGIGLKTAQRIIVDLKGKIQLETSSDEILSARTAVGDAALNTIASGEE
AISALKMLGFADPAIRKAVKSILSEDSSLAVEDIIKRALRML

Nucleotide


Download         Length: 609 bp        

>NTDB_id=601412 NF668_RS06250 WP_012457812.1 1431179..1431787(+) (ruvA) [Porphyromonas gingivalis strain grey]
ATGATAGAGTATCTCAAGGGTGCAATAGTCGGTTTGACGCCGACAAACCTCGTGATCGAGTGTGCGGGAGTGGGTTATGA
TGTGAATGTCTCGCTCACCACTTATTCTGCCTATCAGGGGAAGAAAGAGGGACTTATTTGGATTACACAACTGATCCGAG
AAGATGCCCATTTATTGTATGGCTTTTCCACGAAAGAAGAGCGTACGCTCTTCGGCCAACTCACATCTGTCAGCGGTGTC
GGGCCTACGACGGCACGGCTCATCCTATCTTCCTATGCTCCTCAAGAGCTGGCCGCACTCATTACCACAGGGCAGGCCGA
TGCGCTGAAAGCCGTGAAGGGCATCGGCCTGAAGACCGCTCAGCGTATCATCGTGGATCTGAAAGGTAAGATACAGCTGG
AAACCTCCTCAGACGAGATCTTGTCTGCACGGACGGCTGTAGGAGATGCTGCTCTGAATACCATAGCTTCGGGAGAAGAA
GCCATCAGTGCTCTAAAGATGCTTGGCTTTGCCGATCCGGCTATACGCAAAGCGGTCAAGTCCATTCTCTCCGAGGATTC
GTCCTTAGCTGTCGAAGATATTATCAAGCGAGCATTACGAATGTTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(159-200)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2RJ07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.143

100

0.386
  ruvA Streptococcus pneumoniae TIGR4

37.624

100

0.376
  ruvA Streptococcus pneumoniae R6

37.129

100

0.371
  ruvA Streptococcus pneumoniae D39

37.129

100

0.371