Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NF668_RS01620 Genome accession   NZ_CP098925
Coordinates   376387..376857 (+) Length   156 a.a.
NCBI ID   WP_004583915.1    Uniprot ID   B2RHP3
Organism   Porphyromonas gingivalis strain grey     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 371387..381857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF668_RS01600 (NF668_01595) argS 371645..373438 (+) 1794 WP_301557254.1 arginine--tRNA ligase -
  NF668_RS01605 (NF668_01600) mnmA 373443..374528 (+) 1086 WP_039417083.1 tRNA 2-thiouridine(34) synthase MnmA -
  NF668_RS01610 (NF668_01605) - 374573..375337 (+) 765 WP_005874493.1 exodeoxyribonuclease III -
  NF668_RS01615 (NF668_01610) - 375410..376336 (+) 927 WP_099838324.1 hydrogen peroxide-inducible genes activator -
  NF668_RS01620 (NF668_01615) ssb 376387..376857 (+) 471 WP_004583915.1 single-stranded DNA-binding protein Machinery gene
  NF668_RS01625 (NF668_01620) gldE 376875..378203 (+) 1329 WP_004583916.1 gliding motility-associated protein GldE -
  NF668_RS01630 (NF668_01625) - 378239..378835 (+) 597 WP_061156828.1 4'-phosphopantetheinyl transferase superfamily protein -
  NF668_RS01635 (NF668_01630) - 379075..379203 (-) 129 WP_301557255.1 DNA methylase -
  NF668_RS01640 (NF668_01635) - 379228..380313 (-) 1086 WP_301556863.1 IS5 family transposase -
  NF668_RS01645 (NF668_01640) - 380794..381303 (-) 510 WP_301557256.1 thioredoxin domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17553.50 Da        Isoelectric Point: 5.9755

>NTDB_id=601402 NF668_RS01620 WP_004583915.1 376387..376857(+) (ssb) [Porphyromonas gingivalis strain grey]
MSLNKIILIGRTGKDPEIRYFDSNSAVANFSLATSERGYKLANGTEVPERTEWHNVVAYRELAIFAEKWIKKGSLLYVEG
KIRYRTYVDNTGVRRQVTEILAEKINFFESGSSNRDESRTSQTSSSTQDTMPLASSSSVRDTAKEESSEPPSDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=601402 NF668_RS01620 WP_004583915.1 376387..376857(+) (ssb) [Porphyromonas gingivalis strain grey]
ATGTCTCTGAATAAAATCATCTTGATAGGCCGTACGGGCAAGGATCCCGAGATTCGGTATTTCGATAGCAATTCGGCTGT
CGCAAACTTTTCGCTGGCTACTTCCGAGCGAGGCTACAAGCTGGCCAATGGCACTGAAGTGCCGGAGCGAACGGAATGGC
ATAATGTGGTTGCCTATCGCGAGTTGGCCATTTTTGCCGAGAAGTGGATCAAGAAAGGGAGTCTCCTATATGTCGAAGGA
AAAATCCGCTACCGCACGTATGTAGACAATACAGGGGTTCGTCGGCAAGTGACGGAAATCCTTGCCGAGAAAATCAACTT
TTTTGAAAGCGGTTCCTCCAATCGAGACGAAAGCAGAACTTCACAGACATCTTCATCGACTCAAGATACGATGCCCCTCG
CGTCTTCTTCATCCGTCCGTGATACGGCAAAAGAAGAAAGCTCGGAACCTCCGTCCGACCTTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2RHP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

40.667

96.154

0.391
  ssb Neisseria meningitidis MC58

40.667

96.154

0.391
  ssb Vibrio cholerae strain A1552

34.483

100

0.385