Detailed information NTG0601327

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K6752_RS02955
• Genome accession: NZ_CP082315
• Coordinates: 608168..609037 (-)
• Length: 289 a.a.
• NCBI ID: WP_213880944.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain ZLV3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 603168..614037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6752_RS02920 (K6752_02920)	rpsP	603598..603846 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
K6752_RS02925 (K6752_02925)	rimM	603876..604424 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
K6752_RS02930 (K6752_02930)	trmD	604452..605213 (+)	762	WP_033905595.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
K6752_RS02935 (K6752_02935)	rplS	605255..605608 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
K6752_RS02940 (K6752_02940)	yacG	606432..606626 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
K6752_RS02945 (K6752_02945)	zapD	606785..607525 (-)	741	WP_005373086.1	cell division protein ZapD	-
K6752_RS02950 (K6752_02950)	coaE	607553..608167 (-)	615	WP_213880942.1	dephospho-CoA kinase	-
K6752_RS02955 (K6752_02955)	pilD	608168..609037 (-)	870	WP_213880944.1	prepilin peptidase	Machinery gene
K6752_RS02960 (K6752_02960)	pilC	609102..610325 (-)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
K6752_RS02965 (K6752_02965)	pilB	610349..612034 (-)	1686	WP_213880946.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K6752_RS02970 (K6752_02970)	-	612034..612492 (-)	459	WP_064368760.1	pilin	-
K6752_RS02975 (K6752_02975)	nadC	612754..613641 (-)	888	WP_017820396.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32539.70 Da
• Isoelectric Point: 7.0195

>NTDB_id=601327 K6752_RS02955 WP_213880944.1 608168..609037(-) (pilD) [Vibrio alginolyticus strain ZLV3]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELVTAFCSGFVAYHFGFSYFTVALLFFTFILITATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=601327 K6752_RS02955 WP_213880944.1 608168..609037(-) (pilD) [Vibrio alginolyticus strain ZLV3]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGGTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCACCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTAGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.311	100	0.903
pilD	Vibrio cholerae strain A1552	72.222	99.654	0.72
pilD	Acinetobacter nosocomialis M2	51.087	95.502	0.488
pilD	Acinetobacter baumannii D1279779	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46