Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   K6750_RS01560 Genome accession   NZ_CP082313
Coordinates   333217..333792 (+) Length   191 a.a.
NCBI ID   WP_064368815.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZZV2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328217..338792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6750_RS01545 (K6750_01545) oxyR 328547..329458 (+) 912 WP_005381326.1 DNA-binding transcriptional regulator OxyR -
  K6750_RS01550 (K6750_01550) - 329511..332072 (-) 2562 WP_025768081.1 PBP1A family penicillin-binding protein -
  K6750_RS01555 (K6750_01555) pilM 332217..333233 (+) 1017 WP_005382774.1 type IV pilus assembly protein PilM Machinery gene
  K6750_RS01560 (K6750_01560) pilN 333217..333792 (+) 576 WP_064368815.1 PilN domain-containing protein Machinery gene
  K6750_RS01565 (K6750_01565) pilO 333785..334378 (+) 594 WP_042523672.1 type 4a pilus biogenesis protein PilO Machinery gene
  K6750_RS01570 (K6750_01570) pilP 334368..334883 (+) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  K6750_RS01575 (K6750_01575) pilQ 334909..336654 (+) 1746 WP_042523674.1 type IV pilus secretin PilQ family protein Machinery gene
  K6750_RS01580 (K6750_01580) aroK 336842..337360 (+) 519 WP_005381319.1 shikimate kinase AroK -
  K6750_RS01585 (K6750_01585) aroB 337393..338493 (+) 1101 WP_238966806.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22335.84 Da        Isoelectric Point: 7.4657

>NTDB_id=601267 K6750_RS01560 WP_064368815.1 333217..333792(+) (pilN) [Vibrio alginolyticus strain ZZV2]
MLYRINLLPWRESQREEHRRRFISLVALGMLVAVGIQWGIGKFFEYQQDQQQDRLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVTEKKLEAQRG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=601267 K6750_RS01560 WP_064368815.1 333217..333792(+) (pilN) [Vibrio alginolyticus strain ZZV2]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAGTCAAAGAGAAGAGCACCGACGTCGTTTCATCAGTTTGGTCGC
ATTAGGCATGTTGGTCGCTGTTGGCATCCAGTGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAACAACAGGATC
GGCTCGATTACCTCACTCACTACATTGCCGAACTCGACCAGCGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATCCTCGAACGTCTAAAGGTCGTTGAAGGTTTACAAAACGGACGAAACAAAACGACCGAGTTCATGAACTTAATGCC
TGCCGTTATCCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCTGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGCTCGGCCAAGTTGAACGACGTAGAAATGCATTCCATCGTT
CACGGCAAAGCCCGTTTTGGGAAAGAGTTTCAAACATTCAAAGTGTCTTTCATGTTCAAAGTAACGGAGAAGAAATTGGA
GGCTCAACGTGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

82.199

100

0.822
  pilN Vibrio cholerae strain A1552

62.712

92.67

0.581