Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   M5C73_RS12065 Genome accession   NZ_CP098790
Coordinates   2425931..2426524 (-) Length   197 a.a.
NCBI ID   WP_252160144.1    Uniprot ID   -
Organism   Lactococcus lactis strain WiKim0124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2420931..2431524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C73_RS12030 (M5C73_12030) - 2421145..2421345 (+) 201 WP_003131983.1 hypothetical protein -
  M5C73_RS12035 (M5C73_12035) glnA 2421404..2422744 (-) 1341 WP_003131984.1 type I glutamate--ammonia ligase -
  M5C73_RS12040 (M5C73_12040) - 2422806..2423171 (-) 366 WP_003131985.1 MerR family transcriptional regulator -
  M5C73_RS12045 (M5C73_12045) - 2423272..2423709 (-) 438 WP_003131986.1 low molecular weight protein-tyrosine-phosphatase -
  M5C73_RS12050 (M5C73_12050) - 2423853..2424017 (-) 165 WP_003131988.1 hypothetical protein -
  M5C73_RS12055 (M5C73_12055) - 2424122..2424502 (-) 381 WP_252160142.1 AAA family ATPase -
  M5C73_RS12060 (M5C73_12060) ruvB 2424803..2425804 (-) 1002 WP_252160143.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  M5C73_RS12065 (M5C73_12065) ruvA 2425931..2426524 (-) 594 WP_252160144.1 Holliday junction branch migration protein RuvA Machinery gene
  M5C73_RS12070 (M5C73_12070) hexB 2426637..2428607 (-) 1971 WP_252160145.1 DNA mismatch repair endonuclease MutL Machinery gene
  M5C73_RS12075 (M5C73_12075) - 2428736..2429431 (-) 696 WP_252160146.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21194.78 Da        Isoelectric Point: 5.8174

>NTDB_id=601205 M5C73_RS12065 WP_252160144.1 2425931..2426524(-) (ruvA) [Lactococcus lactis strain WiKim0124]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLVQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=601205 M5C73_RS12065 WP_252160144.1 2425931..2426524(-) (ruvA) [Lactococcus lactis strain WiKim0124]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGTTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462