Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   K6748_RS10370 Genome accession   NZ_CP082307
Coordinates   2220055..2222310 (-) Length   751 a.a.
NCBI ID   WP_238958901.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HNV2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2200317..2224931 2220055..2222310 within 0


Gene organization within MGE regions


Location: 2200317..2224931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6748_RS10295 (K6748_10225) - 2200317..2201087 (-) 771 WP_005378438.1 ABC transporter ATP-binding protein -
  K6748_RS10300 (K6748_10230) - 2201352..2202827 (-) 1476 WP_017820023.1 hypothetical protein -
  K6748_RS10305 (K6748_10235) - 2203282..2204829 (+) 1548 WP_005378441.1 DUF3360 family protein -
  K6748_RS10310 (K6748_10240) pflB 2205133..2207409 (+) 2277 WP_005378442.1 formate C-acetyltransferase -
  K6748_RS10315 (K6748_10245) - 2207563..2208540 (+) 978 WP_005387855.1 lipid A deacylase LpxR family protein -
  K6748_RS10320 (K6748_10250) pflA 2208752..2209492 (+) 741 WP_238958900.1 pyruvate formate lyase 1-activating protein -
  K6748_RS10325 (K6748_10255) - 2209647..2210312 (+) 666 WP_005378445.1 energy-coupling factor ABC transporter permease -
  K6748_RS10330 (K6748_10260) - 2210449..2210949 (+) 501 WP_005378446.1 YfbU family protein -
  K6748_RS10335 (K6748_10265) - 2211443..2213377 (+) 1935 WP_005378447.1 PrkA family serine protein kinase -
  K6748_RS10340 (K6748_10270) - 2213425..2214696 (+) 1272 WP_005378448.1 YeaH/YhbH family protein -
  K6748_RS10345 (K6748_10275) - 2214708..2216267 (+) 1560 WP_005378449.1 SpoVR family protein -
  K6748_RS10350 (K6748_10280) kdsB 2216347..2217102 (-) 756 WP_005378450.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K6748_RS10355 (K6748_10285) - 2217102..2217281 (-) 180 WP_005378451.1 Trm112 family protein -
  K6748_RS10360 (K6748_10290) lpxK 2217262..2218269 (-) 1008 WP_104975987.1 tetraacyldisaccharide 4'-kinase -
  K6748_RS10365 (K6748_10295) msbA 2218275..2220023 (-) 1749 WP_042522131.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K6748_RS10370 (K6748_10300) comEC 2220055..2222310 (-) 2256 WP_238958901.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K6748_RS10375 (K6748_10305) - 2222319..2222828 (+) 510 WP_005387834.1 DUF2062 domain-containing protein -
  K6748_RS10380 (K6748_10310) lolE 2222977..2224221 (-) 1245 WP_025766930.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  K6748_RS10385 (K6748_10315) lolD 2224224..2224931 (-) 708 WP_104975985.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84448.45 Da        Isoelectric Point: 8.3254

>NTDB_id=601197 K6748_RS10370 WP_238958901.1 2220055..2222310(-) (comEC) [Vibrio alginolyticus strain HNV2]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVAIEAVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSISLKPITGLRNEAGFDAEKHAM
GKNIIARAVVNKDAKWIVRSNVSLRQSIIADVADDVSSLHHFSLISALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGTVRYLLPQYQLLPSLYGLIFAVVYAWLADFSLPTTRAVSVCVVYVLLKYTLVHWTSWRVLLLAVSLQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQRGGWKARLKALLLTQLMLSALIVPVSGHFFSGFSLSSIAYNLVFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWHLVDWSLQPLSTSIQYAVGSWQPISMEMTMLVMVIVVCLIFQRFMSQYAWYLLL
GIVISIKFAAEYEPHWRIDVLDVGHGLAVVVEKDDKVLLYDTGKAWQSGSIAEQVVTPVLHQRGYESIDTLILSHSDNDH
AGGRFFIEDAFSPQRKLSSQFFIEYEPCTRGDQWKWQGLNMEVLWPPALVQRAYNPHSCVLRLTDPISNFSMLFTGDIEA
ISEWILLREPGKLQSDVMLVPHHGSKSSSNPRFIEAVSPSVAVASLAKNNRWGMPAENVVASYRKLGVTWLDTGEGGQVS
FFIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=601197 K6748_RS10370 WP_238958901.1 2220055..2222310(-) (comEC) [Vibrio alginolyticus strain HNV2]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATCTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGTTATGAAGGTATTGTCGCTATAGAAGC
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCATCTCGTTAAAGCCGATTACAGGTCTACGCAACGAAGCTGGCTTTGATGCTGAAAAGCACGCGATG
GGTAAAAATATTATCGCCCGAGCGGTTGTTAACAAAGATGCTAAGTGGATTGTTCGTTCTAATGTATCTCTGCGTCAATC
CATTATTGCCGATGTCGCTGATGATGTGTCTTCCCTTCATCATTTCTCGTTAATAAGTGCGTTAGTTTTTGCTGACCGTT
CTTGGTTGTCTAAGGAAGATTGGCAAGCGCTCAGGGACAGTGGTTTACTGCATTTGGTCTCCATTTCTGGTTTACATATT
GGTATGGCGTTTACTTTTGGGCTAGTCGTGGGCGGTACCGTTCGTTATCTATTACCCCAATACCAGTTGTTACCTAGCTT
ATATGGGCTGATCTTCGCTGTTGTCTACGCTTGGTTAGCGGATTTCTCTCTGCCTACTACGCGAGCAGTGTCGGTATGCG
TTGTTTACGTTCTCCTGAAGTATACTCTGGTGCACTGGACTTCTTGGCGAGTTCTTTTGCTTGCAGTATCTCTACAACTG
CTTGTCCAACCTTTTGCATCCTACAGTATGAGCTTTTGGTTATCGTACCTCTCCGTTTGTGCGGTATTGTTCGCAATTAA
TTTGATTCGACATCAAAGGGGAGGTTGGAAAGCGCGATTAAAAGCGTTATTGCTTACTCAATTGATGTTGAGCGCTTTAA
TCGTACCTGTTAGTGGCCATTTCTTCTCCGGTTTTAGTTTGTCCTCAATAGCCTACAACTTGGTATTTATTCCTTGGTTC
GGATTTATCGTTGTACCTTTGATGTTTCTAGCCCTGTTCTCATCTTTGTTTCTTGAAATGATAGCGAAGCCTCTGTGGCA
TTTGGTGGACTGGTCATTACAGCCATTGAGCACGTCAATACAGTACGCAGTAGGTTCTTGGCAACCCATTAGCATGGAAA
TGACAATGCTGGTTATGGTGATAGTGGTTTGCTTAATATTTCAACGGTTCATGTCTCAGTACGCGTGGTATTTGTTACTC
GGCATCGTTATTAGTATCAAGTTTGCAGCGGAGTATGAACCGCATTGGCGTATCGATGTATTAGATGTAGGTCATGGCCT
TGCAGTGGTTGTAGAAAAAGACGACAAGGTGTTGCTGTATGACACTGGTAAAGCATGGCAAAGCGGCAGTATCGCAGAGC
AGGTCGTCACTCCGGTTTTGCATCAACGAGGTTATGAAAGCATAGATACACTGATTCTAAGCCATTCCGATAATGATCAC
GCAGGCGGCCGCTTTTTCATTGAAGATGCCTTTTCTCCACAGCGTAAACTTAGTAGTCAATTCTTTATCGAATATGAGCC
TTGCACTAGAGGCGACCAATGGAAATGGCAAGGATTAAACATGGAAGTGCTCTGGCCTCCTGCACTTGTTCAACGTGCGT
ATAATCCGCACTCCTGTGTATTACGACTTACTGACCCTATTTCTAACTTTAGTATGCTTTTTACTGGTGATATTGAGGCC
ATTAGCGAGTGGATTTTGCTTAGAGAACCCGGAAAGTTACAAAGCGATGTGATGCTAGTCCCTCACCACGGGAGTAAAAG
TTCATCGAATCCTCGATTTATCGAGGCGGTGAGCCCGAGTGTGGCGGTTGCTTCTTTAGCAAAAAACAATCGATGGGGAA
TGCCAGCGGAAAATGTCGTTGCTTCATACCGAAAGCTTGGCGTTACTTGGCTTGATACTGGTGAGGGTGGTCAGGTAAGC
TTCTTTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCTGCG
TAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-465)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

69.681

100

0.698
  comEC Vibrio campbellii strain DS40M4

65.957

100

0.66
  comEC Vibrio cholerae strain A1552

43.767

100

0.439