Detailed information NTG0601184

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K6748_RS02840
• Genome accession: NZ_CP082307
• Coordinates: 583229..584098 (-)
• Length: 289 a.a.
• NCBI ID: WP_017635919.1
• Uniprot ID: A0A2I3C9C8
• Organism: Vibrio alginolyticus strain HNV2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 578229..589098

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6748_RS02805 (K6748_02805)	rpsP	579171..579419 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
K6748_RS02810 (K6748_02810)	rimM	579449..579997 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
K6748_RS02815 (K6748_02815)	trmD	580025..580786 (+)	762	WP_017635923.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
K6748_RS02820 (K6748_02820)	rplS	580828..581181 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
K6748_RS02825 (K6748_02825)	yacG	581493..581687 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
K6748_RS02830 (K6748_02830)	zapD	581846..582586 (-)	741	WP_042521326.1	cell division protein ZapD	-
K6748_RS02835 (K6748_02835)	coaE	582614..583228 (-)	615	WP_042521328.1	dephospho-CoA kinase	-
K6748_RS02840 (K6748_02840)	pilD	583229..584098 (-)	870	WP_017635919.1	A24 family peptidase	Machinery gene
K6748_RS02845 (K6748_02845)	pilC	584163..585386 (-)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
K6748_RS02850 (K6748_02850)	pilB	585410..587095 (-)	1686	WP_042521331.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K6748_RS02855 (K6748_02855)	pilA	587106..587537 (-)	432	WP_042521333.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
K6748_RS02860 (K6748_02860)	nadC	587799..588686 (-)	888	WP_042521335.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32563.76 Da
• Isoelectric Point: 6.8450

>NTDB_id=601184 K6748_RS02840 WP_017635919.1 583229..584098(-) (pilD) [Vibrio alginolyticus strain HNV2]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=601184 K6748_RS02840 WP_017635919.1 583229..584098(-) (pilD) [Vibrio alginolyticus strain HNV2]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCAGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A2I3C9C8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.349	100	0.913
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.222	93.426	0.488
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	47.653	95.848	0.457