Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   BAJP3144_RS17875 Genome accession   NZ_CP082283
Coordinates   3619524..3620687 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3614524..3625687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS17845 (BAJP3144_17845) - 3614789..3615208 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  BAJP3144_RS17850 (BAJP3144_17850) comFC 3615282..3615971 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  BAJP3144_RS17855 (BAJP3144_17855) - 3615977..3616261 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAJP3144_RS17860 (BAJP3144_17860) comFA 3616319..3617704 (-) 1386 WP_095060187.1 DEAD/DEAH box helicase Machinery gene
  BAJP3144_RS17865 (BAJP3144_17865) - 3617812..3618660 (-) 849 WP_003151387.1 DegV family protein -
  BAJP3144_RS17870 (BAJP3144_17870) degU 3618758..3619447 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAJP3144_RS17875 (BAJP3144_17875) degS 3619524..3620687 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAJP3144_RS17880 (BAJP3144_17880) - 3620910..3621557 (+) 648 WP_007614107.1 YigZ family protein -
  BAJP3144_RS17885 (BAJP3144_17885) - 3621562..3622776 (+) 1215 WP_014419013.1 LCP family protein -
  BAJP3144_RS17890 (BAJP3144_17890) - 3622876..3623952 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  BAJP3144_RS17895 (BAJP3144_17895) - 3624084..3625280 (-) 1197 WP_222893435.1 glycosyltransferase -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=601063 BAJP3144_RS17875 WP_007407484.1 3619524..3620687(-) (degS) [Bacillus amyloliquefaciens strain JP3144]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=601063 BAJP3144_RS17875 WP_007407484.1 3619524..3620687(-) (degS) [Bacillus amyloliquefaciens strain JP3144]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTAGGTCTTCAGGAAATCATTGAAC
GGTCAGAATCGTTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCAGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTACGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGCCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGATAATGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951