Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BAJP3144_RS17870 Genome accession   NZ_CP082283
Coordinates   3618758..3619447 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3613758..3624447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS17835 (BAJP3144_17835) - 3613956..3614438 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BAJP3144_RS17840 (BAJP3144_17840) flgM 3614453..3614719 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAJP3144_RS17845 (BAJP3144_17845) - 3614789..3615208 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  BAJP3144_RS17850 (BAJP3144_17850) comFC 3615282..3615971 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  BAJP3144_RS17855 (BAJP3144_17855) - 3615977..3616261 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAJP3144_RS17860 (BAJP3144_17860) comFA 3616319..3617704 (-) 1386 WP_095060187.1 DEAD/DEAH box helicase Machinery gene
  BAJP3144_RS17865 (BAJP3144_17865) - 3617812..3618660 (-) 849 WP_003151387.1 DegV family protein -
  BAJP3144_RS17870 (BAJP3144_17870) degU 3618758..3619447 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAJP3144_RS17875 (BAJP3144_17875) degS 3619524..3620687 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAJP3144_RS17880 (BAJP3144_17880) - 3620910..3621557 (+) 648 WP_007614107.1 YigZ family protein -
  BAJP3144_RS17885 (BAJP3144_17885) - 3621562..3622776 (+) 1215 WP_014419013.1 LCP family protein -
  BAJP3144_RS17890 (BAJP3144_17890) - 3622876..3623952 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=601062 BAJP3144_RS17870 WP_003219701.1 3618758..3619447(-) (degU) [Bacillus amyloliquefaciens strain JP3144]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=601062 BAJP3144_RS17870 WP_003219701.1 3618758..3619447(-) (degU) [Bacillus amyloliquefaciens strain JP3144]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCATGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGTA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1