Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   NEH83_RS15580 Genome accession   NZ_CP098783
Coordinates   3544808..3546229 (+) Length   473 a.a.
NCBI ID   WP_030087855.1    Uniprot ID   A0ABW2MLT1
Organism   Streptomyces sp. JUS-F4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3539808..3551229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEH83_RS15565 (NEH83_15575) - 3540739..3541689 (-) 951 WP_193463863.1 Ppx/GppA phosphatase family protein -
  NEH83_RS15570 (NEH83_15580) - 3541729..3542589 (+) 861 WP_302213458.1 hypothetical protein -
  NEH83_RS15575 (NEH83_15585) - 3542665..3544591 (-) 1927 Protein_3078 hypothetical protein -
  NEH83_RS15580 (NEH83_15590) radA/sms 3544808..3546229 (+) 1422 WP_030087855.1 DNA repair protein RadA Machinery gene
  NEH83_RS15585 (NEH83_15595) disA 3546310..3547434 (+) 1125 WP_006125491.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  NEH83_RS15590 (NEH83_15600) - 3547848..3548672 (-) 825 WP_302213459.1 hypothetical protein -
  NEH83_RS15595 (NEH83_15605) - 3548891..3549805 (+) 915 WP_302213460.1 A/G-specific adenine glycosylase -
  NEH83_RS15600 (NEH83_15610) - 3549967..3550638 (+) 672 WP_030087862.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 49818.02 Da        Isoelectric Point: 8.4942

>NTDB_id=601062 NEH83_RS15580 WP_030087855.1 3544808..3546229(+) (radA/sms) [Streptomyces sp. JUS-F4]
MAARTKTAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIKAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRVLPRRSRQEAPQPRQEDNARR

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=601062 NEH83_RS15580 WP_030087855.1 3544808..3546229(+) (radA/sms) [Streptomyces sp. JUS-F4]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCGCCCGCCGTGCGCACCACCGCGGCGG
GCCGGGTCTCCACGGCTGCGCTGCCGATCGGCCAGGTCGACAGCCGTACGGCCACCGCCCGCTCGACCGGCGTCGGTGAG
CTGGACCGGGTGCTCGGCGGCGGGCTCGTGCCGGGCGCGGTCGTGCTGCTGGCCGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTATGTGACCGCCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGGGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGATCTCTCCGCGGTG
CTCGGCCATCTGGACGCGGTGAAGCCCTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGAATGGCCCAGGTCCGGGAGGTCGCCGGGGCACTGATCCGGGCGTCCAAGGAGCGCGGGATGGCCACGC
TGCTGGTCGGCCACGTCACCAAGGACGGCGCCATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCGTCAAGAATCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGTCTCGCCGACCCCTCGGGCCTCTTCCTGACCCGCCGCGACGTGGCGGTGC
CGGGCACCTGCCTCACCGTGACGCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGGGTGAAGCTCACCGAGCCCGCCGCCGACC
TGGCCATCGCGCTCGCGCTGGCCAGCGCCGCCAGCGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGGAGGGTCACCGGGGTGCAGCGGAGGCTGGCCGAGGCACACCGGCTGGGCTTCACCCACGCGCT
CGTTCCGACCGATCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGATGCTCTGCGGGTCC
TCCCGCGCCGGTCTCGTCAAGAGGCGCCGCAGCCTCGTCAGGAAGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

AAA domain (AAA_25)

(85-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

95.772

0.419
  radA Streptococcus mitis SK321

44.289

90.698

0.402
  radA Streptococcus pneumoniae Rx1

44.289

90.698

0.402
  radA Streptococcus pneumoniae D39

44.289

90.698

0.402
  radA Streptococcus pneumoniae R6

44.289

90.698

0.402
  radA Streptococcus pneumoniae TIGR4

44.289

90.698

0.402
  radA Streptococcus mitis NCTC 12261

44.289

90.698

0.402