Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BAJP3144_RS17860 Genome accession   NZ_CP082283
Coordinates   3616319..3617704 (-) Length   461 a.a.
NCBI ID   WP_095060187.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3611319..3622704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS17825 (BAJP3144_17825) flgL 3611494..3612411 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  BAJP3144_RS17830 (BAJP3144_17830) flgK 3612423..3613940 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  BAJP3144_RS17835 (BAJP3144_17835) - 3613956..3614438 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BAJP3144_RS17840 (BAJP3144_17840) flgM 3614453..3614719 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAJP3144_RS17845 (BAJP3144_17845) - 3614789..3615208 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  BAJP3144_RS17850 (BAJP3144_17850) comFC 3615282..3615971 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  BAJP3144_RS17855 (BAJP3144_17855) - 3615977..3616261 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAJP3144_RS17860 (BAJP3144_17860) comFA 3616319..3617704 (-) 1386 WP_095060187.1 DEAD/DEAH box helicase Machinery gene
  BAJP3144_RS17865 (BAJP3144_17865) - 3617812..3618660 (-) 849 WP_003151387.1 DegV family protein -
  BAJP3144_RS17870 (BAJP3144_17870) degU 3618758..3619447 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAJP3144_RS17875 (BAJP3144_17875) degS 3619524..3620687 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAJP3144_RS17880 (BAJP3144_17880) - 3620910..3621557 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52647.14 Da        Isoelectric Point: 10.2284

>NTDB_id=601061 BAJP3144_RS17860 WP_095060187.1 3616319..3617704(-) (comFA) [Bacillus amyloliquefaciens strain JP3144]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEEKGCLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=601061 BAJP3144_RS17860 WP_095060187.1 3616319..3617704(-) (comFA) [Bacillus amyloliquefaciens strain JP3144]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAAGAAAAAGGCTGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGTAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCAGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTAGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACTAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGCTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62