Detailed information NTG0601051

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NEH83_RS10160
• Genome accession: NZ_CP098783
• Coordinates: 2308772..2309950 (-)
• Length: 392 a.a.
• NCBI ID: WP_302216942.1
• Uniprot ID: -
• Organism: Streptomyces sp. JUS-F4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2303772..2314950

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NEH83_RS10150 (NEH83_10155)	rcrP	2305095..2306828 (+)	1734	WP_302212769.1	ABC transporter ATP-binding protein	Regulator
NEH83_RS10155 (NEH83_10160)	rcrQ	2306828..2308756 (+)	1929	WP_302212770.1	ABC transporter ATP-binding protein	Regulator
NEH83_RS10160 (NEH83_10165)	rpoS	2308772..2309950 (-)	1179	WP_302216942.1	RNA polymerase sigma factor	Regulator
NEH83_RS10165 (NEH83_10170)	dnaG	2310103..2312032 (-)	1930	Protein_2018	DNA primase	-
NEH83_RS10170 (NEH83_10175)	-	2312083..2313342 (-)	1260	WP_030078056.1	NAD(P)/FAD-dependent oxidoreductase	-
NEH83_RS10175 (NEH83_10180)	-	2313481..2314839 (-)	1359	WP_302212771.1	deoxyguanosinetriphosphate triphosphohydrolase	-

Sequence

Protein

• Length: 392 a.a.
• Molecular weight: 43398.20 Da
• Isoelectric Point: 6.2031

>NTDB_id=601051 NEH83_RS10160 WP_302216942.1 2308772..2309950(-) (rpoS) [Streptomyces sp. JUS-F4]
MGARRSTGTPGAGQTSTPSSGSDHLEVAPVQTRTVTTTTEPIAAIPAQHRALHHPETTAGPPGHAPEAVMVEATHLPEPP
EPRNRADSGGPTSDLFRQYLREIGRIPLLTAAEEVELARRVEAGLFAEERLAGTPDLDSRLAGDLDRLVVMGRTAKRRLI
EANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELI
NRVVRVQRRLLQERGVEPTAEDIAAELDLTPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFLLL
REHLEAVLSTLGERERKVVQLRYGLEDGRPRTLEEIGRIFGVTRERIRQIESKTLSRLRDHAFADQLRGYLD

Nucleotide

• Length: 1179 bp

>NTDB_id=601051 NEH83_RS10160 WP_302216942.1 2308772..2309950(-) (rpoS) [Streptomyces sp. JUS-F4]
ATCGGAGCACGCCGGTCCACGGGGACACCCGGGGCCGGGCAGACCTCCACCCCGTCATCCGGCAGCGATCACCTGGAGGT
CGCCCCCGTGCAGACCCGGACCGTGACGACCACGACCGAGCCCATCGCGGCCATCCCGGCGCAGCACAGGGCCCTGCACC
ACCCGGAGACCACAGCCGGCCCGCCCGGACACGCACCCGAGGCAGTCATGGTGGAAGCGACGCATCTCCCCGAACCGCCG
GAGCCACGGAACCGGGCGGACTCCGGCGGCCCCACCTCCGATCTGTTCCGGCAGTATCTGCGCGAGATCGGCCGCATCCC
GCTGCTCACCGCCGCCGAGGAGGTCGAGCTCGCCCGCCGCGTCGAGGCCGGGCTCTTCGCCGAGGAACGCCTCGCGGGCA
CCCCCGACCTCGACTCCCGCCTCGCCGGGGACCTGGACCGGCTGGTGGTGATGGGCCGCACCGCCAAGCGCCGCCTCATC
GAGGCCAACCTCCGCCTCGTCGTCTCCGTCGCCAAGCGCTATGTGGGCCGCGGGCTGACCATGCTCGACCTGGTCCAGGA
GGGCAACCTCGGGCTGATCCGGGCGGTGGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCCACCTGGT
GGATCCGCCAGGCCATGTCCCGCGCGCTGGCCGACCAGGCCCGCACCATCCGCGTCCCGGTCCACGTAGTGGAGCTGATC
AACCGCGTCGTCCGGGTCCAGCGCCGGCTCCTCCAGGAACGCGGCGTCGAGCCGACCGCCGAGGACATCGCCGCGGAGCT
GGACCTGACGCCCGAGCGGGTCACCGAAGTCCTCCGCCTGGCCCAGGAACCCGTCTCGCTGCACGCCCCCGTCGGCGAGG
AGGACGACGTCTCCTTCGGCGACCTCATCGAGGACGGCGACGCCGCCTCACCCGTCGAGTCCGCCGCCTTCCTGCTGCTG
CGCGAGCACCTGGAGGCGGTCCTCTCCACCCTCGGCGAACGCGAACGCAAGGTCGTGCAACTGCGGTACGGCCTGGAGGA
CGGGCGGCCCCGCACCTTGGAGGAGATCGGCCGGATCTTCGGCGTGACACGCGAACGCATCCGCCAGATCGAGTCCAAGA
CCCTCAGCAGGCTGCGGGACCACGCCTTCGCCGACCAGCTCCGCGGCTATCTCGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (94-127)

• Sigma-70 region 2 (Sigma70_r2) (159-228)

• Sigma-70 region 3 (Sigma70_r3) (238-314)

• Sigma-70, region 4 (Sigma70_r4) (327-379)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	41.787	88.52	0.37