Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NEH83_RS10150 Genome accession   NZ_CP098783
Coordinates   2305095..2306828 (+) Length   577 a.a.
NCBI ID   WP_302212769.1    Uniprot ID   -
Organism   Streptomyces sp. JUS-F4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2300095..2311828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEH83_RS10110 (NEH83_10115) - 2300630..2300881 (-) 252 WP_143665787.1 hypothetical protein -
  NEH83_RS10115 (NEH83_10120) - 2301192..2301605 (-) 414 WP_086777829.1 hypothetical protein -
  NEH83_RS10120 (NEH83_10125) - 2301629..2302351 (+) 723 Protein_2012 hypothetical protein -
  NEH83_RS10140 (NEH83_10145) - 2303089..2303397 (+) 309 WP_030078067.1 hypothetical protein -
  NEH83_RS10145 (NEH83_10150) - 2303465..2304916 (+) 1452 WP_030078065.1 FGGY family carbohydrate kinase -
  NEH83_RS10150 (NEH83_10155) rcrP 2305095..2306828 (+) 1734 WP_302212769.1 ABC transporter ATP-binding protein Regulator
  NEH83_RS10155 (NEH83_10160) rcrQ 2306828..2308756 (+) 1929 WP_302212770.1 ABC transporter ATP-binding protein Regulator
  NEH83_RS10160 (NEH83_10165) rpoS 2308772..2309950 (-) 1179 WP_302216942.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62265.33 Da        Isoelectric Point: 5.2565

>NTDB_id=601049 NEH83_RS10150 WP_302212769.1 2305095..2306828(+) (rcrP) [Streptomyces sp. JUS-F4]
MLIKLLRAHLGPYKKPIVLLVCLQLLQTCATLYLPSLNADIIDNGVVTGDTGYILEFGGLMIAVSVLQVLCNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMVVLLAFTLMVSAPIMCVGGIVMALGLDVPLSTV
LLAVVPVLGVSVGLIVRKMGPLFRTMQERLDGVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTESSVVP
PVAPVTELRRHGHLEVRGAEFRYPGAEEPVLRAVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGEDVR
TLDPVLLSKTVSLVPQKPYLFSGTVATNLRYGNPDASDEELWHALEVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRLVGSGTHHELMEGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=601049 NEH83_RS10150 WP_302212769.1 2305095..2306828(+) (rcrP) [Streptomyces sp. JUS-F4]
GTGCTCATAAAACTCCTGCGGGCCCATCTGGGCCCGTACAAGAAACCCATCGTGCTGCTGGTCTGTCTCCAGCTGCTCCA
GACCTGCGCCACCCTGTATCTGCCCAGCCTGAACGCCGACATCATCGACAACGGTGTCGTCACCGGTGACACCGGCTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGTGTTCTGCAGGTCCTCTGCAACGTGGGGGCCGTCTATTACGGGGCG
CGTACCGCATCCGCCCTCGGGCGTGACGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGTGAGCTGGG
CCGGTTCGGGGCGCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGGTGGTGCTGCTGGCGTTCA
CGCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTCGGCCTGGATGTGCCGCTCTCCACCGTG
CTGCTGGCGGTCGTGCCGGTGCTCGGGGTCTCGGTCGGTCTCATCGTGCGGAAGATGGGACCGCTGTTCCGCACCATGCA
GGAGCGGCTGGACGGCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGGGACG
GGTACGAGGAGAAGCGGTTCCGGGGTGCGAACACCGAGCTGACCGATGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTCAACCTGTCGTCGGTCGCGGTGGTGTGGTTCGGCGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGTGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGGGACCGAGTCGAGCGTCGTGCCG
CCCGTCGCGCCCGTCACCGAGCTGCGGCGGCACGGGCATCTGGAGGTGCGGGGCGCGGAGTTCCGGTATCCGGGTGCGGA
GGAGCCGGTGCTGCGGGCGGTCGACCTGGTGGCGCGGCCCGGGGAGACCACCGCGGTCATCGGGTCCACAGGCAGCGGGA
AGTCCACGCTGCTCGGGCTCGTACCCCGGCTGTTCGATGTGACGGACGGCGAGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTGGATCCGGTGCTGCTGTCGAAGACGGTGTCGCTGGTGCCGCAGAAGCCCTACCTCTTCTCGGGGACGGTGGCGAC
GAACCTGCGGTACGGGAACCCGGACGCGAGCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCACAGGCGAAGGAGTTCG
TGGAGGCCCTGGAGCACGGGCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCGGGCGGTCAGCGGCAGCGGCTC
GCCATCGCGCGGACGCTGGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTGGGCCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGCTCGTGGGGTCCGGCACCCATCACGAGCTGATGGAAGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.927

100

0.39