Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NEH83_RS10155 Genome accession   NZ_CP098783
Coordinates   2306828..2308756 (+) Length   642 a.a.
NCBI ID   WP_302212770.1    Uniprot ID   -
Organism   Streptomyces sp. JUS-F4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2301828..2313756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEH83_RS10140 (NEH83_10145) - 2303089..2303397 (+) 309 WP_030078067.1 hypothetical protein -
  NEH83_RS10145 (NEH83_10150) - 2303465..2304916 (+) 1452 WP_030078065.1 FGGY family carbohydrate kinase -
  NEH83_RS10150 (NEH83_10155) rcrP 2305095..2306828 (+) 1734 WP_302212769.1 ABC transporter ATP-binding protein Regulator
  NEH83_RS10155 (NEH83_10160) rcrQ 2306828..2308756 (+) 1929 WP_302212770.1 ABC transporter ATP-binding protein Regulator
  NEH83_RS10160 (NEH83_10165) rpoS 2308772..2309950 (-) 1179 WP_302216942.1 RNA polymerase sigma factor Regulator
  NEH83_RS10165 (NEH83_10170) dnaG 2310103..2312032 (-) 1930 Protein_2018 DNA primase -
  NEH83_RS10170 (NEH83_10175) - 2312083..2313342 (-) 1260 WP_030078056.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69298.57 Da        Isoelectric Point: 5.0723

>NTDB_id=601050 NEH83_RS10155 WP_302212770.1 2306828..2308756(+) (rcrQ) [Streptomyces sp. JUS-F4]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFGREKTSLWLMLGAVAVSVGLSVAGPKILGRATDLIFAGVIGREMPEGS
TKAQAIEGLREEGRGSMADMLSGVGFTPGEGIDFGAVGNVLLLALAVYVGAGLLMLVATRLSIRVINRIVFQLREDLQTK
LARLPLSYFDRSKRGEVLSRATNDIDNISQTLQQTMGQLINSLLTIVGVLVVMFWISPLLALVALVTVPLSVVVATQVGK
RSQPQFVQQWRVTGTLNAHVEEMYTGHNLVKVFGRQRESARDFAEQNEALYEAGFKAQFASGLMQPLMFFISNLNYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVFELLDAEEQEADPEHGERPERPAGRVSLE
KVSFRYEPEKPLIEDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSRDDLRSSIGMVLQDT
WLFGGTIAENIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDSVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLAAGGAYARLYAAQFAEALAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=601050 NEH83_RS10155 WP_302212770.1 2306828..2308756(+) (rcrQ) [Streptomyces sp. JUS-F4]
ATGGCCGGTCCGGGCGGACGGATGATGGCCGGGGGCGCGCCCACCGACCGGTCGATGGATTTCAAGGGGTCGAGCAAGCG
GCTGCTGAAGCGGTTCGGCCGGGAGAAGACCTCGCTCTGGCTGATGCTGGGCGCGGTGGCGGTGAGCGTCGGCCTCTCGG
TGGCCGGGCCGAAGATCCTCGGCAGGGCGACCGACCTGATCTTCGCCGGTGTCATCGGGCGCGAGATGCCCGAGGGCTCG
ACGAAGGCGCAGGCGATCGAGGGGCTGCGCGAGGAGGGCCGCGGCTCGATGGCCGACATGCTCTCGGGGGTGGGCTTCAC
CCCGGGCGAGGGCATCGACTTCGGGGCGGTGGGGAACGTCCTGCTGCTGGCCCTGGCGGTCTACGTCGGGGCCGGGCTGC
TGATGCTGGTGGCGACGCGGCTGTCGATCCGGGTGATCAACCGGATCGTGTTCCAGTTGCGTGAGGACCTCCAGACGAAG
CTGGCGCGGCTGCCGCTGTCGTACTTCGACCGGTCCAAGCGCGGTGAGGTGCTGAGCCGGGCGACGAACGACATCGACAA
CATCTCGCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTGACCATCGTCGGCGTGCTGGTCGTGATGT
TCTGGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTCCCGCTGTCGGTGGTCGTGGCGACGCAGGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGGGTGACGGGCACGCTCAACGCCCATGTCGAGGAGATGTACACCGGGCA
CAACCTGGTGAAGGTCTTCGGCCGGCAGCGGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCGG
GCTTCAAGGCCCAGTTCGCCAGCGGGCTCATGCAGCCGCTGATGTTCTTCATCTCCAACCTCAACTATGTGCTGGTCGCG
GTGGTCGGCGGGCTCCGGGTCGCCTCGGGCACGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCCAACCTCGTCCAGTCCGGCATCGCGTCCGCGGAGCGGGTCTTCGAGC
TGCTGGACGCCGAGGAGCAGGAGGCGGATCCGGAGCACGGTGAGCGCCCGGAGCGGCCGGCCGGCCGGGTCTCGCTGGAG
AAGGTGTCCTTCCGCTACGAGCCGGAGAAGCCGCTGATCGAGGATCTGTCGCTGAGCGTGGAGCCGGGGCAGACCGTCGC
GATCGTCGGTCCGACCGGGGCGGGCAAGACGACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGA
TCGCGCTCGACGGGGTCGATGTGGCGAAGATGTCCCGGGACGATCTGCGGTCCTCGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACGATCGCGGAGAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGC
GGCCCGGGCGGCGCATGCCGACCGGTTCATCCGGACGCTGCCCGACGGGTACGACTCGGTGATCGACGACGAGGGCACCG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGTTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCCCACGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAGCGGCTCGATCGTCGAACAGG
GCACGCACGAGGAGCTGTTGGCGGCCGGTGGGGCCTATGCCCGGCTGTACGCCGCCCAGTTCGCGGAGGCGCTGGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.129

82.243

0.363