Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BAJP3144_RS12615 Genome accession   NZ_CP082283
Coordinates   2591712..2592782 (-) Length   356 a.a.
NCBI ID   WP_014418378.1    Uniprot ID   A0AAP4DGV9
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2586712..2597782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS12565 (BAJP3144_12565) sipW 2586771..2587355 (-) 585 WP_012117977.1 signal peptidase I SipW -
  BAJP3144_RS12570 (BAJP3144_12570) tapA 2587327..2587998 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  BAJP3144_RS12575 (BAJP3144_12575) - 2588257..2588586 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BAJP3144_RS12580 (BAJP3144_12580) - 2588627..2588806 (-) 180 WP_003153093.1 YqzE family protein -
  BAJP3144_RS12585 (BAJP3144_12585) comGG 2588863..2589240 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  BAJP3144_RS12590 (BAJP3144_12590) comGF 2589241..2589636 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  BAJP3144_RS12595 (BAJP3144_12595) comGE 2589650..2589964 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  BAJP3144_RS12600 (BAJP3144_12600) comGD 2589948..2590385 (-) 438 WP_095061019.1 competence type IV pilus minor pilin ComGD Machinery gene
  BAJP3144_RS12605 (BAJP3144_12605) comGC 2590375..2590641 (-) 267 WP_050496152.1 competence type IV pilus major pilin ComGC Machinery gene
  BAJP3144_RS12610 (BAJP3144_12610) comGB 2590688..2591725 (-) 1038 WP_014418377.1 competence type IV pilus assembly protein ComGB Machinery gene
  BAJP3144_RS12615 (BAJP3144_12615) comGA 2591712..2592782 (-) 1071 WP_014418378.1 competence type IV pilus ATPase ComGA Machinery gene
  BAJP3144_RS12620 (BAJP3144_12620) - 2592975..2593925 (-) 951 WP_014418379.1 magnesium transporter CorA family protein -
  BAJP3144_RS12625 (BAJP3144_12625) - 2594071..2595372 (+) 1302 WP_021494315.1 hemolysin family protein -
  BAJP3144_RS12630 (BAJP3144_12630) - 2595410..2596240 (-) 831 WP_021494316.1 STAS domain-containing protein -
  BAJP3144_RS12640 (BAJP3144_12640) - 2596447..2596827 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BAJP3144_RS12645 (BAJP3144_12645) - 2597064..2597309 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40529.81 Da        Isoelectric Point: 9.3485

>NTDB_id=601042 BAJP3144_RS12615 WP_014418378.1 2591712..2592782(-) (comGA) [Bacillus amyloliquefaciens strain JP3144]
MKNIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKQQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=601042 BAJP3144_RS12615 WP_014418378.1 2591712..2592782(-) (comGA) [Bacillus amyloliquefaciens strain JP3144]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAGGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGTG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCAGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCATTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCGACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAACGGCATTTCAACCGGCGGATTGTCACGCTTGAAGATCCCGTAGAAACAAGAGATGAGGATGTGCTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGACCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCCGCCATGACGGGGCACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCTCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.303

100

0.823
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374