Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   K6I41_RS16185 Genome accession   NZ_CP082274
Coordinates   3416064..3416468 (-) Length   134 a.a.
NCBI ID   WP_250374780.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3411064..3421468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS16155 (K6I41_16040) - 3411146..3411415 (-) 270 WP_013198928.1 HPr family phosphocarrier protein -
  K6I41_RS16160 (K6I41_16045) rapZ 3411412..3412263 (-) 852 WP_004794551.1 RNase adapter RapZ -
  K6I41_RS16165 (K6I41_16050) panC 3412288..3413136 (-) 849 WP_005302410.1 pantoate--beta-alanine ligase -
  K6I41_RS16170 (K6I41_16055) panB 3413140..3413949 (-) 810 WP_004794557.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  K6I41_RS16175 (K6I41_16060) folK 3413996..3414478 (-) 483 WP_005302406.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K6I41_RS16180 (K6I41_16065) pcnB 3414475..3415938 (-) 1464 WP_250374779.1 polynucleotide adenylyltransferase PcnB -
  K6I41_RS16185 (K6I41_16070) comEA 3416064..3416468 (-) 405 WP_250374780.1 ComEA family DNA-binding protein Machinery gene
  K6I41_RS16190 (K6I41_16075) mazG 3416437..3417243 (-) 807 WP_192835852.1 nucleoside triphosphate pyrophosphohydrolase -
  K6I41_RS16195 (K6I41_16080) - 3417356..3418129 (+) 774 WP_107880761.1 SDR family oxidoreductase -
  K6I41_RS16200 (K6I41_16085) - 3418178..3420484 (-) 2307 WP_005302395.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15353.63 Da        Isoelectric Point: 10.4153

>NTDB_id=600768 K6I41_RS16185 WP_250374780.1 3416064..3416468(-) (comEA) [Acinetobacter sp. AS23]
MHLSMNLWKSKSYIFIVLFWSLISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQHSSHSSVPKSSVITDSSGQVHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKARLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=600768 K6I41_RS16185 WP_250374780.1 3416064..3416468(-) (comEA) [Acinetobacter sp. AS23]
ATGCATCTCAGCATGAATCTTTGGAAGAGTAAGTCTTATATTTTTATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACACTCCTCGCATTCTAGCGTTCCCAAAAGCTCAGTTATAACTGACTCTTCGGGACAAGTTCACTTGAATCAAGCCAAT
ATTGATGAGCTTCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAGCACGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

66.423

100

0.679
  comEA Acinetobacter baumannii D1279779

66.423

100

0.679
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396