Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   K6I41_RS13145 Genome accession   NZ_CP082274
Coordinates   2785863..2786570 (+) Length   235 a.a.
NCBI ID   WP_004793675.1    Uniprot ID   A0AAJ1PDR6
Organism   Acinetobacter sp. AS23     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2780863..2791570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS13125 (K6I41_13020) - 2783675..2784484 (+) 810 WP_250374521.1 M23 family metallopeptidase -
  K6I41_RS13130 (K6I41_13025) - 2784481..2784906 (-) 426 WP_250374522.1 GNAT family N-acetyltransferase -
  K6I41_RS13135 (K6I41_13030) - 2785001..2785423 (-) 423 WP_005041936.1 OsmC family protein -
  K6I41_RS13140 - 2785559..2785621 (-) 63 Protein_2562 hypothetical protein -
  K6I41_RS13145 (K6I41_13035) crp 2785863..2786570 (+) 708 WP_004793675.1 cAMP-activated global transcriptional regulator CRP Regulator
  K6I41_RS13150 (K6I41_13040) - 2786730..2787779 (+) 1050 WP_250374523.1 NADP(H)-dependent aldo-keto reductase -
  K6I41_RS13155 (K6I41_13045) - 2787835..2788614 (-) 780 WP_013198497.1 M48 family metallopeptidase -
  K6I41_RS13160 (K6I41_13050) - 2788730..2789047 (-) 318 WP_013198498.1 hypothetical protein -
  K6I41_RS13165 (K6I41_13055) - 2789167..2790486 (-) 1320 WP_151767711.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26521.16 Da        Isoelectric Point: 4.6625

>NTDB_id=600764 K6I41_RS13145 WP_004793675.1 2785863..2786570(+) (crp) [Acinetobacter sp. AS23]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDVSLEEAPVSDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=600764 K6I41_RS13145 WP_004793675.1 2785863..2786570(+) (crp) [Acinetobacter sp. AS23]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATACTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGACGAACGTGAAATTGTTGTTGCATATTTGAATCCGGGCGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
AATTTCTTATGACAACTTCCACGAACTTAGCAAACAATATCCGGACTTAAGTTATGCTGTTTTTGCACAACTTGTTCGCC
GTCTAAAAAATACAACTCGTAAAATGACAGATCTTGCATTTATTGATGTATCTGGGCGTATTGCACGTTGTTTAATCGAC
TTATCTTCACAACCAGAAGCAATGATTTTGCCAAACGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
GGGATGTTCACGTGAGATGGTTGGCCGTGTACTTAAGACATTAGAAGATCAAGGTATGATCCAGACAGATGGTAAAGCTA
TTCTTATTTTTGATGTTTCATTAGAAGAAGCTCCAGTTTCTGATGAAGACTATGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

98.298

100

0.983
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4