Detailed information NTG0600704

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: K4O48_RS16460
• Genome accession: NZ_CP082271
• Coordinates: 3531727..3533064 (+)
• Length: 445 a.a.
• NCBI ID: WP_222909451.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DNDY-54
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3526727..3538064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K4O48_RS16440	rluD	3527455..3528429 (-)	975	WP_222909447.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
K4O48_RS16445	-	3528733..3529740 (+)	1008	WP_222909448.1	outer membrane protein assembly factor BamD	-
K4O48_RS16450	-	3529799..3530032 (+)	234	WP_222909449.1	PP0621 family protein	-
K4O48_RS16455	pilS	3530022..3531614 (+)	1593	WP_260523645.1	sensor histidine kinase	Regulator
K4O48_RS16460	pilR	3531727..3533064 (+)	1338	WP_222909451.1	sigma-54-dependent transcriptional regulator	Regulator
K4O48_RS16465	-	3533099..3534154 (-)	1056	WP_222909452.1	DUF2333 family protein	-
K4O48_RS16470	-	3534375..3535988 (+)	1614	WP_222909453.1	PleD family two-component system response regulator	-
K4O48_RS20785	-	3537219..3537998 (+)	780	WP_409518953.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49765.44 Da
• Isoelectric Point: 6.8306

>NTDB_id=600704 K4O48_RS16460 WP_222909451.1 3531727..3533064(+) (pilR) [Pseudomonas sp. DNDY-54]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGCGLELVQFIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLGRLRELVNTALRLRTPNPNVTVDGRLLGASPPMNVLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRHERPFVPVNCGAIPSELMESEFFGHKKGSFTGAMEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAKEVVVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDVAQLAEVM
LRRLAQECGDMPARLHPDALAKLQSYRFPGNVRELENMLERAYTLCEGEEIKPSDLRLSDAPGMPENGEASLAQIDNLED
HLEDVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=600704 K4O48_RS16460 WP_222909451.1 3531727..3533064(+) (pilR) [Pseudomonas sp. DNDY-54]
ATGACCGCCCGCCAAAAAGCGCTGATCATCGATGACGAACCCGATATCCGGGAGCTGCTGGAGATCACGCTCGGGCGGAT
GAAGCTCGACACACGCAGCGCTCGCAACCTCAAGGAGGCGCGCGAGTGTCTGGCCAGGGAGCATTACGACCTGTGTCTGA
CCGACATGCGCCTGCCCGACGGGTGTGGATTGGAGCTGGTGCAGTTCATTCAGCAGCAATACCCGCAGCTCCCCGTTGCG
ATGATTACCGCTTACGGCAGCCTCGACACCGCCATAGGCGCACTCAAGGCAGGCGCGTTCGACTTTCTCACCAAACCGGT
CGACCTCGGACGACTGCGGGAGTTGGTCAATACCGCCCTGCGGCTCCGCACGCCAAATCCCAACGTAACGGTGGACGGCC
GCTTGCTTGGCGCGTCGCCGCCTATGAACGTGCTTCGCAAGCAGATCGGCAAACTGGCGCGCAGTCAGGCCCCGGTGTAT
ATCAGCGGCGAATCCGGCAGCGGCAAAGAACTTGTGGCGCGGCTGATCCATGAACAAGGCCCGCGCCATGAGCGCCCTTT
TGTGCCAGTCAACTGTGGTGCCATCCCATCTGAGCTGATGGAGAGTGAATTCTTCGGGCACAAGAAGGGTAGTTTCACCG
GTGCGATGGAGGACAAACCTGGCCTGTTCCAGGCCGCTAACGGCGGCACATTGTTTCTCGATGAAGTGGCGGACCTCCCC
CTTCCAATGCAGGTGAAGCTGCTCCGCGCGATCCAGGAAAAGGCGGTGCGCGCAGTCGGCGGCGCCAAAGAGGTCGTGGT
CGACGTGCGAATCCTCTGCGCCACGCACAAGGACTTAGCCAGCGAGGTTGCTGCCGGACGCTTCCGCCAGGATCTGTACT
ACCGCTTGAACGTCATTGAGTTACGCGTGCCGCCACTTCGCGAGCGCCGTGAAGACGTTGCGCAACTGGCCGAGGTGATG
CTTCGCCGCCTCGCCCAGGAATGCGGCGACATGCCCGCCCGGCTGCACCCCGACGCATTGGCAAAGCTGCAAAGCTATCG
GTTCCCGGGCAACGTGCGAGAACTGGAAAACATGCTAGAGCGCGCGTACACGCTTTGCGAAGGCGAGGAAATCAAGCCCA
GCGATCTGCGTTTGTCCGATGCTCCGGGTATGCCCGAGAATGGCGAAGCGAGCCTGGCTCAGATCGACAATCTCGAAGAT
CACCTAGAGGATGTCGAGCGCAAGCTAATCATGCAGGCGCTTGAGGAAACCCGCTGGAATCGCACGGCCGCCGCCCAGAG
ACTGGGCTTGTCATTCCGCTCCATGCGTTATCGCCTGAAGAAACTTGGGCTTGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Response regulator receiver domain (Response_reg) (8-116)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	83.784	99.775	0.836
pilR	Acinetobacter baumannii strain A118	49.237	100	0.508
luxO	Vibrio cholerae strain A1552	39.013	100	0.391