Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K4O48_RS13530 Genome accession   NZ_CP082271
Coordinates   2925549..2927774 (-) Length   741 a.a.
NCBI ID   WP_222908929.1    Uniprot ID   -
Organism   Pseudomonas sp. DNDY-54     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2920549..2932774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4O48_RS13495 murB 2920942..2921961 (-) 1020 WP_222908923.1 UDP-N-acetylmuramate dehydrogenase -
  K4O48_RS13500 - 2921958..2922422 (-) 465 WP_222908924.1 low molecular weight protein-tyrosine-phosphatase -
  K4O48_RS13505 kdsB 2922425..2923189 (-) 765 WP_222908925.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K4O48_RS13510 - 2923186..2923371 (-) 186 WP_222908926.1 Trm112 family protein -
  K4O48_RS13515 lpxK 2923425..2924420 (-) 996 WP_222908927.1 tetraacyldisaccharide 4'-kinase -
  K4O48_RS13520 - 2924420..2924848 (-) 429 WP_222908928.1 ExbD/TolR family protein -
  K4O48_RS13525 exbB 2924845..2925477 (-) 633 WP_222912099.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K4O48_RS13530 comA 2925549..2927774 (-) 2226 WP_222908929.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K4O48_RS13535 - 2927953..2928468 (+) 516 WP_222908930.1 DUF2062 domain-containing protein -
  K4O48_RS13540 - 2928477..2929724 (-) 1248 WP_222908931.1 lipoprotein-releasing ABC transporter permease subunit -
  K4O48_RS13545 lolD 2929724..2930422 (-) 699 WP_222912100.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  K4O48_RS13550 - 2930430..2931677 (-) 1248 WP_222908932.1 lipoprotein-releasing ABC transporter permease subunit -
  K4O48_RS13555 - 2931778..2932350 (+) 573 WP_222908933.1 PilZ domain-containing protein -
  K4O48_RS13560 - 2932354..2932659 (+) 306 WP_222908934.1 phosphodiesterase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80428.79 Da        Isoelectric Point: 7.6084

>NTDB_id=600696 K4O48_RS13530 WP_222908929.1 2925549..2927774(-) (comA) [Pseudomonas sp. DNDY-54]
MRTAMLALAAGLLLLRFLPQLPPVSMILAMLVAGLALLPFRWRAIGCFLCGLGWACLHAHWAVDDRLPTELDGRTFWLEG
QVTGLPDVRGGVVRFEIVDVSSRHEGLPSRLRLAWYGGPEVRSGERWRLAAKLKKPRGLVNPHAFDYEAWLLARRIGASG
TIKAGSRLSTPDGGEAWRDQLRHRLLSVDAHGRSGAIAALVVGDDSGLSATDWRVLQDTGTVHLMVISGQHVGMLAGLLY
GMVALMARWGPWPRRVPWLPCACGLALSGALAYGWLAGFDVPVQRALVMVALVLLWRLRYRHLGVWLPLLIALDGVLLID
PLVGLQSGFWLSFSAVALLALIFRGRLGASSWWEVLGRAQWSMALGLLPVLIALGLPVSLSGPIANLVAVPLVSVLVVPL
SLAGTSLLWLPVAGESLLWLAGGTLSVLFDGLHWLAGWQSAWLPVSLPLWGWLLVFIGMLVTLLPAGVPFRALGVVLLAP
LLFPPADKPSTGEADLWVFDVGQGLAVLVRTGTHALLYDAGPRYGDFDIGERVVFPSLRTLGVAELDLLVLSHADSDHAG
GAQAIQRLMPVGQVLSGEPGRLPAALNAETCRSGEQWEWDSVSFRLWRWSEAGEGNQSSCVLMVEANGERLLLTGDIDVP
AEQALLTENMPLDARWLLVPHHGSRSSSSTEFIEAVSAEGALVSRSLHNAFGHPHPDVVRRLNAFGARVYDTAEQGALHI
RLGRFEPVRGSRAQQRFWQEK

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=600696 K4O48_RS13530 WP_222908929.1 2925549..2927774(-) (comA) [Pseudomonas sp. DNDY-54]
ATGCGAACAGCGATGCTGGCGCTGGCGGCAGGCCTCTTACTGCTGCGCTTCTTGCCGCAACTTCCGCCTGTGTCGATGAT
CCTCGCGATGCTTGTCGCGGGCTTGGCCTTGTTGCCGTTCCGCTGGCGAGCGATCGGTTGTTTTCTTTGCGGCCTTGGCT
GGGCTTGTTTACACGCTCACTGGGCGGTGGATGATCGTCTCCCTACGGAACTTGACGGGCGTACATTCTGGCTCGAGGGC
CAAGTAACTGGTTTGCCTGACGTTCGTGGCGGTGTGGTGCGCTTCGAGATTGTCGACGTATCGTCCCGACATGAGGGCTT
GCCGTCACGCCTTCGCCTGGCGTGGTACGGAGGGCCGGAAGTTCGGTCGGGAGAGCGATGGCGGCTCGCCGCCAAGCTGA
AAAAACCCCGCGGTCTGGTCAATCCACACGCGTTCGATTATGAGGCGTGGCTCCTGGCTCGGCGCATTGGCGCGAGCGGC
ACGATCAAGGCTGGCTCGAGGCTATCGACTCCAGACGGGGGCGAGGCGTGGCGCGATCAGCTGCGCCACCGTTTGTTGTC
CGTTGACGCACATGGCCGCTCAGGCGCAATCGCCGCGTTAGTAGTAGGAGATGACAGCGGCCTGTCCGCGACCGATTGGC
GGGTCCTTCAGGACACCGGCACGGTACATCTCATGGTGATTTCCGGCCAGCATGTCGGCATGCTGGCCGGCCTGCTCTAC
GGTATGGTCGCATTGATGGCTCGCTGGGGCCCTTGGCCCCGACGCGTTCCCTGGTTGCCCTGCGCTTGCGGCTTGGCGCT
GTCCGGCGCGCTTGCGTACGGCTGGCTGGCGGGCTTCGACGTACCAGTCCAGCGAGCGTTGGTCATGGTCGCGCTGGTGC
TTCTGTGGCGCTTGCGGTATCGACACCTTGGCGTCTGGCTACCCTTGCTGATTGCGCTTGATGGCGTGCTGTTGATCGAT
CCGCTGGTGGGTCTGCAGTCAGGGTTCTGGTTGTCATTCAGTGCAGTTGCGTTGCTGGCGCTGATCTTTCGAGGACGTCT
TGGCGCGAGCTCGTGGTGGGAGGTGCTAGGCCGTGCGCAGTGGAGCATGGCCCTCGGTCTGTTGCCGGTCTTGATTGCGT
TGGGGCTGCCCGTGAGTCTCAGTGGGCCGATCGCCAACCTGGTTGCAGTGCCATTGGTCAGCGTGCTGGTCGTGCCGCTC
TCGCTGGCGGGGACCTCGCTATTATGGTTGCCGGTGGCAGGCGAGTCGCTACTGTGGCTAGCAGGTGGGACGCTGTCGGT
GCTATTCGATGGGTTGCATTGGCTGGCTGGCTGGCAATCGGCCTGGCTTCCGGTCTCCTTGCCACTGTGGGGATGGTTGC
TGGTTTTCATCGGGATGCTGGTCACGCTACTGCCAGCGGGTGTTCCGTTTCGGGCGTTGGGCGTGGTGCTTCTTGCCCCC
TTGCTGTTTCCGCCTGCCGACAAGCCTTCAACCGGCGAGGCGGATTTATGGGTGTTCGATGTCGGGCAGGGATTGGCAGT
GCTGGTGCGCACAGGTACCCATGCATTGCTCTACGACGCGGGGCCCCGTTATGGCGACTTCGATATCGGCGAGCGGGTTG
TATTTCCATCGTTGCGAACATTGGGTGTGGCCGAGCTCGATCTACTGGTTTTGAGCCATGCCGATAGCGACCACGCCGGC
GGCGCTCAGGCGATCCAGCGGCTTATGCCGGTCGGGCAGGTGCTGAGCGGCGAACCGGGAAGGCTACCCGCGGCGTTGAA
CGCCGAAACGTGCCGCTCTGGAGAGCAGTGGGAGTGGGACTCGGTTAGCTTCAGGCTTTGGCGATGGTCGGAGGCAGGAG
AGGGCAACCAGTCCTCATGTGTACTCATGGTCGAAGCCAATGGCGAACGTCTGTTGCTCACTGGGGATATCGATGTGCCG
GCTGAGCAGGCGCTGCTAACAGAGAATATGCCCCTTGATGCCCGCTGGTTATTGGTCCCTCACCATGGCAGTCGCAGCTC
GTCGTCAACCGAGTTCATCGAGGCGGTGAGCGCGGAGGGCGCGCTCGTTTCGCGCAGCTTGCACAATGCGTTTGGGCATC
CGCATCCGGATGTCGTCCGACGCCTGAACGCTTTCGGCGCTCGCGTCTATGACACGGCCGAGCAGGGGGCGCTGCACATC
CGTCTCGGACGTTTCGAACCCGTTCGCGGATCGCGCGCTCAACAGCGGTTCTGGCAGGAAAAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-682)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(200-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

71.389

97.166

0.694
  comA Ralstonia pseudosolanacearum GMI1000

34.565

100

0.391