Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K4O48_RS13525 Genome accession   NZ_CP082271
Coordinates   2924845..2925477 (-) Length   210 a.a.
NCBI ID   WP_222912099.1    Uniprot ID   -
Organism   Pseudomonas sp. DNDY-54     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2919845..2930477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4O48_RS13495 murB 2920942..2921961 (-) 1020 WP_222908923.1 UDP-N-acetylmuramate dehydrogenase -
  K4O48_RS13500 - 2921958..2922422 (-) 465 WP_222908924.1 low molecular weight protein-tyrosine-phosphatase -
  K4O48_RS13505 kdsB 2922425..2923189 (-) 765 WP_222908925.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K4O48_RS13510 - 2923186..2923371 (-) 186 WP_222908926.1 Trm112 family protein -
  K4O48_RS13515 lpxK 2923425..2924420 (-) 996 WP_222908927.1 tetraacyldisaccharide 4'-kinase -
  K4O48_RS13520 - 2924420..2924848 (-) 429 WP_222908928.1 ExbD/TolR family protein -
  K4O48_RS13525 exbB 2924845..2925477 (-) 633 WP_222912099.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K4O48_RS13530 comA 2925549..2927774 (-) 2226 WP_222908929.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K4O48_RS13535 - 2927953..2928468 (+) 516 WP_222908930.1 DUF2062 domain-containing protein -
  K4O48_RS13540 - 2928477..2929724 (-) 1248 WP_222908931.1 lipoprotein-releasing ABC transporter permease subunit -
  K4O48_RS13545 lolD 2929724..2930422 (-) 699 WP_222912100.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22682.95 Da        Isoelectric Point: 7.9111

>NTDB_id=600695 K4O48_RS13525 WP_222912099.1 2924845..2925477(-) (exbB) [Pseudomonas sp. DNDY-54]
MWELVKAGGWIMLPIILCSIAAAGIIAERLWTLRPSRVTPSHLLGQVWKWIKDKKLSNQKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSAFMGAGMANAPLLASGISKALITTAA
GLMVGIPALFFHRFLLRRVEELVVGMEQEAIKLVEVVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=600695 K4O48_RS13525 WP_222912099.1 2924845..2925477(-) (exbB) [Pseudomonas sp. DNDY-54]
GTGTGGGAGCTGGTTAAAGCAGGCGGCTGGATAATGCTGCCAATCATTCTGTGTTCCATCGCTGCCGCCGGCATCATCGC
TGAAAGGCTGTGGACCCTTCGGCCGAGCCGAGTAACCCCGTCGCACTTGCTTGGTCAGGTGTGGAAATGGATCAAGGATA
AGAAACTCAGTAACCAGAAGCTCAAAGAGCTGCGTGCTGATTCACCGCTGGGTGAGATTTTGGCTGCCGGTCTAGCCAAC
TCCAAGCATGGGCGGGAGATCATGAAGGAGTGCATCGAGGAAGCGGCGGCACGGGTCGTTCATGATCTCGAGCGCTACCT
CAATGCGCTGGGCACCATCGCCGGCATTGCGCCGTTACTCGGCCTTCTCGGCACCGTGCTCGGGATGATTGAAATCTTCA
GCGCATTCATGGGCGCTGGTATGGCTAACGCCCCGTTACTTGCCTCGGGTATTTCGAAAGCGCTCATTACCACTGCCGCG
GGCCTGATGGTCGGCATTCCTGCGTTGTTCTTCCACCGCTTTTTGCTGCGTCGAGTCGAAGAGCTGGTAGTCGGAATGGA
GCAGGAAGCCATCAAGCTGGTCGAGGTGGTACAGGGTGACCGTGATGTCGATTTGGGTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

96.19

100

0.962