Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   NDQ68_RS02345 Genome accession   NZ_CP098542
Coordinates   454332..454805 (+) Length   157 a.a.
NCBI ID   WP_172760650.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10704     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449332..459805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ68_RS02320 (NDQ68_02300) dnaB 449925..451331 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDQ68_RS02325 (NDQ68_02305) pilH 451485..452150 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ68_RS02330 (NDQ68_02310) pilV 452182..452793 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  NDQ68_RS02335 (NDQ68_02315) pilJ 452790..453740 (+) 951 WP_229433524.1 PilW family protein Machinery gene
  NDQ68_RS02340 (NDQ68_02320) pilK 453719..454330 (+) 612 WP_229433526.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ68_RS02345 (NDQ68_02325) pilL 454332..454805 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDQ68_RS02350 (NDQ68_02330) - 454875..455183 (-) 309 WP_025456177.1 AzlD family protein -
  NDQ68_RS02355 (NDQ68_02335) - 455180..455890 (-) 711 Protein_463 AzlC family ABC transporter permease -
  NDQ68_RS02360 (NDQ68_02340) dut 456056..456508 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDQ68_RS02365 (NDQ68_02345) dapC 456584..457771 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  NDQ68_RS02370 (NDQ68_02350) yaaA 457927..458706 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17429.25 Da        Isoelectric Point: 9.7225

>NTDB_id=600677 NDQ68_RS02345 WP_172760650.1 454332..454805(+) (pilL) [Neisseria gonorrhoeae strain 10704]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPLDDNQTIKTKLEIFVSGYKM
NPKIAKKYSVSVAFANTEKPRVYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASAQAYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=600677 NDQ68_RS02345 WP_172760650.1 454332..454805(+) (pilL) [Neisseria gonorrhoeae strain 10704]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGACCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGTATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAGGCCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.083

100

0.911
  pilX Neisseria meningitidis 8013

88.535

100

0.885