Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   NDQ68_RS02330 Genome accession   NZ_CP098542
Coordinates   452182..452793 (+) Length   203 a.a.
NCBI ID   WP_003699626.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10704     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 447182..457793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ68_RS02305 (NDQ68_02285) - 447780..448112 (+) 333 WP_003687908.1 hypothetical protein -
  NDQ68_RS02310 (NDQ68_02290) - 448439..448948 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDQ68_RS02315 (NDQ68_02295) - 449180..449761 (-) 582 WP_003690895.1 superoxide dismutase -
  NDQ68_RS02320 (NDQ68_02300) dnaB 449925..451331 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDQ68_RS02325 (NDQ68_02305) pilH 451485..452150 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ68_RS02330 (NDQ68_02310) pilV 452182..452793 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  NDQ68_RS02335 (NDQ68_02315) pilJ 452790..453740 (+) 951 WP_229433524.1 PilW family protein Machinery gene
  NDQ68_RS02340 (NDQ68_02320) pilK 453719..454330 (+) 612 WP_229433526.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ68_RS02345 (NDQ68_02325) pilL 454332..454805 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDQ68_RS02350 (NDQ68_02330) - 454875..455183 (-) 309 WP_025456177.1 AzlD family protein -
  NDQ68_RS02355 (NDQ68_02335) - 455180..455890 (-) 711 Protein_463 AzlC family ABC transporter permease -
  NDQ68_RS02360 (NDQ68_02340) dut 456056..456508 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDQ68_RS02365 (NDQ68_02345) dapC 456584..457771 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21997.01 Da        Isoelectric Point: 5.0177

>NTDB_id=600674 NDQ68_RS02330 WP_003699626.1 452182..452793(+) (pilV) [Neisseria gonorrhoeae strain 10704]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDLDSNKKN
YSLYMGKQTPSAVDGKFTLDAEKSKAQLAEEQLKRFSYELKNALPDAVGIHYAVCKDSSGNEPTLSDSGVFSSNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLGVSGGNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=600674 NDQ68_RS02330 WP_003699626.1 452182..452793(+) (pilV) [Neisseria gonorrhoeae strain 10704]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTGCAGCTGCGGACGGTCGCTTCCGTCAGGGAAGCGGAGACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTTGGATAGCAACAAGAAAAAC
TATAGTCTTTACATGGGAAAACAGACACCATCAGCTGTGGATGGTAAGTTTACGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGTCGGTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTAACGAGCCGACATTGTCCGACAGCGGTGTTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGGGGTGAG
CGGCGGCAATATCGTATATACTTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

87.44

100

0.892
  pilV/pilI Neisseria gonorrhoeae MS11

82.759

100

0.828