Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   K4A81_RS18205 Genome accession   NZ_CP082262
Coordinates   3661236..3661925 (-) Length   229 a.a.
NCBI ID   WP_199449054.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIM B-454D     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3656236..3666925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4A81_RS18170 (K4A81_18170) fliW 3656327..3656758 (-) 432 WP_021494095.1 flagellar assembly protein FliW -
  K4A81_RS18175 (K4A81_18175) - 3656788..3657357 (-) 570 WP_003151397.1 DUF6470 family protein -
  K4A81_RS18180 (K4A81_18180) flgL 3657448..3658365 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  K4A81_RS18185 (K4A81_18185) flgK 3658377..3659894 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  K4A81_RS18190 (K4A81_18190) - 3659910..3660392 (-) 483 WP_003151394.1 flagellar protein FlgN -
  K4A81_RS18195 (K4A81_18195) flgM 3660407..3660673 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  K4A81_RS18200 (K4A81_18200) - 3660743..3661162 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  K4A81_RS18205 (K4A81_18205) comFC 3661236..3661925 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  K4A81_RS18210 (K4A81_18210) - 3661931..3662215 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  K4A81_RS18215 (K4A81_18215) comFA 3662273..3663658 (-) 1386 WP_029972824.1 DEAD/DEAH box helicase Machinery gene
  K4A81_RS18220 (K4A81_18220) - 3663766..3664614 (-) 849 WP_003151387.1 DegV family protein -
  K4A81_RS18225 (K4A81_18225) degU 3664712..3665401 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  K4A81_RS18230 (K4A81_18230) degS 3665478..3666641 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25275.91 Da        Isoelectric Point: 8.2927

>NTDB_id=600584 K4A81_RS18205 WP_199449054.1 3661236..3661925(-) (comFC) [Bacillus velezensis strain BIM B-454D]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSACSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=600584 K4A81_RS18205 WP_199449054.1 3661236..3661925(-) (comFC) [Bacillus velezensis strain BIM B-454D]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCGCATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598