Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   K4A81_RS16295 Genome accession   NZ_CP082262
Coordinates   3254625..3255269 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain BIM B-454D     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3249625..3260269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4A81_RS16260 (K4A81_16260) - 3250810..3251241 (+) 432 WP_103526659.1 Na(+)/H(+) antiporter subunit B -
  K4A81_RS16265 (K4A81_16265) - 3251241..3251582 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  K4A81_RS16270 (K4A81_16270) - 3251575..3253056 (+) 1482 WP_103526658.1 Na+/H+ antiporter subunit D -
  K4A81_RS16275 (K4A81_16275) - 3253062..3253538 (+) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  K4A81_RS16280 (K4A81_16280) - 3253538..3253822 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  K4A81_RS16285 (K4A81_16285) mnhG 3253806..3254180 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  K4A81_RS16290 (K4A81_16290) - 3254220..3254603 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  K4A81_RS16295 (K4A81_16295) comA 3254625..3255269 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  K4A81_RS16300 (K4A81_16300) comP 3255350..3257650 (-) 2301 WP_222885027.1 histidine kinase Regulator
  K4A81_RS16305 (K4A81_16305) comX 3257664..3257837 (-) 174 WP_180997901.1 competence pheromone ComX -
  K4A81_RS16310 (K4A81_16310) - 3257806..3258666 (-) 861 WP_180997900.1 polyprenyl synthetase family protein -
  K4A81_RS16315 (K4A81_16315) degQ 3258874..3259014 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  K4A81_RS16320 (K4A81_16320) - 3259480..3259821 (+) 342 WP_103526655.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=600579 K4A81_RS16295 WP_003152052.1 3254625..3255269(-) (comA) [Bacillus velezensis strain BIM B-454D]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=600579 K4A81_RS16295 WP_003152052.1 3254625..3255269(-) (comA) [Bacillus velezensis strain BIM B-454D]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864