Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K6751_RS05330 Genome accession   NZ_CP082244
Coordinates   1136023..1137363 (+) Length   446 a.a.
NCBI ID   WP_044410357.1    Uniprot ID   A0A0D6SA47
Organism   Metapseudomonas otitidis strain CSMC7.1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131023..1142363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6751_RS05305 (K6751_05305) pgeF 1131213..1131938 (-) 726 WP_222901066.1 peptidoglycan editing factor PgeF -
  K6751_RS05310 (K6751_05310) rluD 1131938..1132909 (-) 972 WP_044410847.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K6751_RS05315 (K6751_05315) - 1133057..1134055 (+) 999 WP_044410365.1 outer membrane protein assembly factor BamD -
  K6751_RS05320 (K6751_05320) - 1134202..1134438 (+) 237 WP_044410363.1 PP0621 family protein -
  K6751_RS05325 (K6751_05325) pilS 1134425..1136020 (+) 1596 WP_233473422.1 sensor histidine kinase Regulator
  K6751_RS05330 (K6751_05330) pilR 1136023..1137363 (+) 1341 WP_044410357.1 sigma-54-dependent transcriptional regulator Regulator
  K6751_RS05335 (K6751_05335) thiO 1137376..1138461 (-) 1086 WP_222901067.1 glycine oxidase ThiO -
  K6751_RS05340 (K6751_05340) - 1138490..1139017 (+) 528 WP_222901068.1 GspH/FimT family protein -
  K6751_RS05345 (K6751_05345) - 1139129..1139644 (+) 516 WP_222901069.1 GspH/FimT family pseudopilin -
  K6751_RS05350 (K6751_05350) pilV 1139631..1140206 (+) 576 WP_142012026.1 type IV pilus modification protein PilV -
  K6751_RS05355 (K6751_05355) - 1140203..1141006 (+) 804 WP_222901070.1 PilW family protein -
  K6751_RS05360 (K6751_05360) - 1141018..1141563 (+) 546 WP_222901071.1 PilX N-terminal domain-containing pilus assembly protein -
  K6751_RS05365 (K6751_05365) - 1141577..1141918 (+) 342 WP_222901072.1 hypothetical protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49956.26 Da        Isoelectric Point: 6.0001

>NTDB_id=600498 K6751_RS05330 WP_044410357.1 1136023..1137363(+) (pilR) [Metapseudomonas otitidis strain CSMC7.1]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGQELVQYIQQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRLRSGESDEEASVDSRLLGESPPMRALRNQIQKLARSQAPV
YISGESGSGKELVARLIHEQGPRASHPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAAHGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLFYRLNVIELGVPPLRERREDIPRLADV
MLKRLAEACSLPAATLTRDALEKLKTYRFPGNVRELENMLERAYTLCENDQIQPHDLRFTEAAGAAEGGEADLAKIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=600498 K6751_RS05330 WP_044410357.1 1136023..1137363(+) (pilR) [Metapseudomonas otitidis strain CSMC7.1]
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTGCTGGAGATCACCCTCGGCCGGATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCCGCGAGTGGCTGGCCCGCGAACCGTTCGACCTCTGCCTGACGG
ACATGCGCCTGCCCGATGGCACCGGGCAGGAGTTGGTGCAGTACATCCAGCAGCGGCATCCCCAGGTGCCGGTGGCCATG
ATCACGGCCTACGGCAGCCTGGATACCGCCATCAATGCCCTCAAGGCCGGTGCCTTCGACTTCCTGACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAGCTGGTGGCGACTGCCCTGCGGCTGCGCAGCGGCGAGTCAGATGAAGAAGCCAGCGTCGACA
GCCGCCTGCTGGGCGAATCGCCCCCGATGCGGGCGTTGCGCAACCAGATCCAGAAGCTCGCCCGCAGCCAGGCGCCCGTC
TACATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTGGTCGCACGACTCATACATGAGCAGGGCCCGCGCGCCAGCCACCC
CTTCGTGCCAGTGAACTGCGGCGCCATTCCGTCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCA
CCGGTGCCATCGAGGACAAACAGGGCCTGTTCCAGGCTGCCCACGGTGGCACCCTGTTCCTCGACGAAGTGGCCGACCTG
CCGCTACCCATGCAGGTCAAGCTGCTGCGGGCCATTCAGGAGAAGGCGGTACGTGCCGTTGGTGGCCAGCAGGAAGTGGT
GGTGGACGTGCGCATCCTCAGTGCCACTCACAAGGACCTGGCTGCCGAGGTGGCAGCCGGGCGATTCCGCCAGGACCTGT
TCTACCGGCTCAATGTGATCGAACTGGGGGTGCCACCGTTGCGTGAGCGCCGCGAAGACATTCCCCGCCTGGCGGACGTG
ATGCTCAAGCGCCTGGCCGAAGCCTGCTCGCTGCCGGCCGCGACCCTTACCCGTGATGCGCTGGAGAAGCTCAAGACCTA
CCGCTTCCCCGGGAACGTGCGCGAGCTGGAGAACATGCTCGAGCGGGCCTACACCCTGTGCGAAAACGACCAGATCCAGC
CCCATGACCTGCGCTTCACCGAGGCTGCTGGCGCGGCAGAGGGCGGCGAGGCGGACCTTGCCAAGATCGACAACCTCGAG
GACTACCTCGAGGAGATCGAGCGCAAGCTGATCATGCAGGCCCTGGAAGAGACCCGCTGGAACCGCACGGCAGCAGCCCA
GCGTCTTGGGCTGACCTTTCGTTCCATGCGTTACAGGCTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6SA47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.565

100

0.886
  pilR Acinetobacter baumannii strain A118

50.327

100

0.518