Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   BAJP3042_RS18045 Genome accession   NZ_CP082243
Coordinates   3717129..3717248 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3712129..3722248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS18025 (BAJP3042_18025) - 3712479..3712991 (+) 513 Protein_3521 bacteriocin biosynthesis protein AlbG -
  BAJP3042_RS18030 (BAJP3042_18030) - 3712998..3714374 (-) 1377 WP_222835457.1 YncE family protein -
  BAJP3042_RS18035 (BAJP3042_18035) - 3714414..3715769 (-) 1356 WP_015240776.1 YncE family protein -
  BAJP3042_RS18040 (BAJP3042_18040) rapF 3716000..3717145 (+) 1146 WP_080130556.1 tetratricopeptide repeat protein Regulator
  BAJP3042_RS18045 (BAJP3042_18045) phrF 3717129..3717248 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAJP3042_RS18050 (BAJP3042_18050) - 3717446..3717649 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  BAJP3042_RS18055 (BAJP3042_18055) - 3717663..3717866 (+) 204 WP_007407641.1 hypothetical protein -
  BAJP3042_RS18060 (BAJP3042_18060) - 3717901..3718086 (+) 186 WP_063093997.1 DUF4177 domain-containing protein -
  BAJP3042_RS18065 (BAJP3042_18065) - 3718272..3718553 (+) 282 WP_007407643.1 hypothetical protein -
  BAJP3042_RS18070 (BAJP3042_18070) - 3718597..3719109 (+) 513 WP_080130555.1 stage II sporulation protein M -
  BAJP3042_RS18075 (BAJP3042_18075) - 3719700..3719918 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  BAJP3042_RS18080 (BAJP3042_18080) speB 3720087..3720959 (-) 873 WP_007614448.1 agmatinase -
  BAJP3042_RS18085 (BAJP3042_18085) speE 3721018..3721848 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=600484 BAJP3042_RS18045 WP_015240778.1 3717129..3717248(+) (phrF) [Bacillus amyloliquefaciens strain JP3042]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=600484 BAJP3042_RS18045 WP_015240778.1 3717129..3717248(+) (phrF) [Bacillus amyloliquefaciens strain JP3042]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462