Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   BAJP3042_RS18040 Genome accession   NZ_CP082243
Coordinates   3716000..3717145 (+) Length   381 a.a.
NCBI ID   WP_080130556.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3711000..3722145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS18020 (BAJP3042_18020) - 3711897..3712325 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  BAJP3042_RS18025 (BAJP3042_18025) - 3712479..3712991 (+) 513 Protein_3521 bacteriocin biosynthesis protein AlbG -
  BAJP3042_RS18030 (BAJP3042_18030) - 3712998..3714374 (-) 1377 WP_222835457.1 YncE family protein -
  BAJP3042_RS18035 (BAJP3042_18035) - 3714414..3715769 (-) 1356 WP_015240776.1 YncE family protein -
  BAJP3042_RS18040 (BAJP3042_18040) rapF 3716000..3717145 (+) 1146 WP_080130556.1 tetratricopeptide repeat protein Regulator
  BAJP3042_RS18045 (BAJP3042_18045) phrF 3717129..3717248 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAJP3042_RS18050 (BAJP3042_18050) - 3717446..3717649 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  BAJP3042_RS18055 (BAJP3042_18055) - 3717663..3717866 (+) 204 WP_007407641.1 hypothetical protein -
  BAJP3042_RS18060 (BAJP3042_18060) - 3717901..3718086 (+) 186 WP_063093997.1 DUF4177 domain-containing protein -
  BAJP3042_RS18065 (BAJP3042_18065) - 3718272..3718553 (+) 282 WP_007407643.1 hypothetical protein -
  BAJP3042_RS18070 (BAJP3042_18070) - 3718597..3719109 (+) 513 WP_080130555.1 stage II sporulation protein M -
  BAJP3042_RS18075 (BAJP3042_18075) - 3719700..3719918 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  BAJP3042_RS18080 (BAJP3042_18080) speB 3720087..3720959 (-) 873 WP_007614448.1 agmatinase -
  BAJP3042_RS18085 (BAJP3042_18085) speE 3721018..3721848 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45615.74 Da        Isoelectric Point: 4.5769

>NTDB_id=600483 BAJP3042_RS18040 WP_080130556.1 3716000..3717145(+) (rapF) [Bacillus amyloliquefaciens strain JP3042]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=600483 BAJP3042_RS18040 WP_080130556.1 3716000..3717145(+) (rapF) [Bacillus amyloliquefaciens strain JP3042]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCCTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.74

100

0.787
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567