Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BAJP3042_RS15080 Genome accession   NZ_CP082243
Coordinates   3098109..3098753 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3093109..3103753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS15045 (BAJP3042_15045) - 3094294..3094725 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  BAJP3042_RS15050 (BAJP3042_15050) - 3094725..3095066 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BAJP3042_RS15055 (BAJP3042_15055) - 3095059..3096540 (+) 1482 WP_222835291.1 Na+/H+ antiporter subunit D -
  BAJP3042_RS15060 (BAJP3042_15060) - 3096546..3097022 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  BAJP3042_RS15065 (BAJP3042_15065) - 3097022..3097306 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BAJP3042_RS15070 (BAJP3042_15070) mnhG 3097290..3097664 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BAJP3042_RS15075 (BAJP3042_15075) - 3097704..3098087 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  BAJP3042_RS15080 (BAJP3042_15080) comA 3098109..3098753 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  BAJP3042_RS15085 (BAJP3042_15085) comP 3098834..3101143 (-) 2310 WP_020954299.1 histidine kinase Regulator
  BAJP3042_RS15090 (BAJP3042_15090) - 3101163..3101339 (-) 177 WP_007408675.1 competence pheromone ComX -
  BAJP3042_RS15095 (BAJP3042_15095) comQ 3101339..3102223 (-) 885 WP_032865221.1 class 1 isoprenoid biosynthesis enzyme Regulator
  BAJP3042_RS15100 (BAJP3042_15100) degQ 3102408..3102548 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BAJP3042_RS15105 (BAJP3042_15105) - 3103014..3103355 (+) 342 WP_025285192.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=600470 BAJP3042_RS15080 WP_003152052.1 3098109..3098753(-) (comA) [Bacillus amyloliquefaciens strain JP3042]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=600470 BAJP3042_RS15080 WP_003152052.1 3098109..3098753(-) (comA) [Bacillus amyloliquefaciens strain JP3042]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864