Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   NDQ70_RS02680 Genome accession   NZ_CP098534
Coordinates   520081..520554 (+) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   B4RKG7
Organism   Neisseria gonorrhoeae strain 10525     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515081..525554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ70_RS02655 (NDQ70_06890) dnaB 515564..516967 (+) 1404 WP_012503477.1 replicative DNA helicase -
  NDQ70_RS12040 - 516961..517073 (-) 113 Protein_516 IS5/IS1182 family transposase -
  NDQ70_RS02660 (NDQ70_06885) pilH 517224..517886 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ70_RS02665 (NDQ70_06880) pilV/pilI 517918..518532 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  NDQ70_RS02670 (NDQ70_06875) pilJ 518529..519488 (+) 960 WP_260247272.1 PilW family protein Machinery gene
  NDQ70_RS02675 (NDQ70_06870) pilK 519467..520066 (+) 600 WP_260247273.1 pilus assembly protein Machinery gene
  NDQ70_RS02680 (NDQ70_06865) pilL 520081..520554 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  NDQ70_RS02685 (NDQ70_06860) - 520624..520932 (-) 309 WP_003706588.1 AzlD family protein -
  NDQ70_RS02690 (NDQ70_06855) - 520929..521640 (-) 712 Protein_523 AzlC family ABC transporter permease -
  NDQ70_RS02695 (NDQ70_06850) dut 521806..522258 (+) 453 WP_003701071.1 dUTP diphosphatase -
  NDQ70_RS02700 (NDQ70_06845) dapC 522330..523517 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  NDQ70_RS02705 (NDQ70_06840) yaaA 523673..524452 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=600470 NDQ70_RS02680 WP_012503482.1 520081..520554(+) (pilL) [Neisseria gonorrhoeae strain 10525]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=600470 NDQ70_RS02680 WP_012503482.1 520081..520554(+) (pilL) [Neisseria gonorrhoeae strain 10525]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854