Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NDQ70_RS02660 Genome accession   NZ_CP098534
Coordinates   517224..517886 (+) Length   220 a.a.
NCBI ID   WP_041421240.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10525     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512224..522886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ70_RS02635 (NDQ70_06910) cysT 512401..513230 (-) 830 Protein_511 sulfate ABC transporter permease subunit CysT -
  NDQ70_RS02640 (NDQ70_06905) - 513416..513748 (+) 333 WP_003687908.1 hypothetical protein -
  NDQ70_RS02645 (NDQ70_06900) - 514078..514587 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDQ70_RS02650 (NDQ70_06895) - 514819..515400 (-) 582 WP_003690895.1 superoxide dismutase -
  NDQ70_RS02655 (NDQ70_06890) dnaB 515564..516967 (+) 1404 WP_012503477.1 replicative DNA helicase -
  NDQ70_RS12040 - 516961..517073 (-) 113 Protein_516 IS5/IS1182 family transposase -
  NDQ70_RS02660 (NDQ70_06885) pilH 517224..517886 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ70_RS02665 (NDQ70_06880) pilV/pilI 517918..518532 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  NDQ70_RS02670 (NDQ70_06875) pilJ 518529..519488 (+) 960 WP_260247272.1 PilW family protein Machinery gene
  NDQ70_RS02675 (NDQ70_06870) pilK 519467..520066 (+) 600 WP_260247273.1 pilus assembly protein Machinery gene
  NDQ70_RS02680 (NDQ70_06865) pilL 520081..520554 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  NDQ70_RS02685 (NDQ70_06860) - 520624..520932 (-) 309 WP_003706588.1 AzlD family protein -
  NDQ70_RS02690 (NDQ70_06855) - 520929..521640 (-) 712 Protein_523 AzlC family ABC transporter permease -
  NDQ70_RS02695 (NDQ70_06850) dut 521806..522258 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24496.91 Da        Isoelectric Point: 9.6166

>NTDB_id=600466 NDQ70_RS02660 WP_041421240.1 517224..517886(+) (pilH) [Neisseria gonorrhoeae strain 10525]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYTFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKNNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=600466 NDQ70_RS02660 WP_041421240.1 517224..517886(+) (pilH) [Neisseria gonorrhoeae strain 10525]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACACCTTCAATCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

95.909

100

0.959