Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BAJP3042_RS02040 Genome accession   NZ_CP082243
Coordinates   439511..440464 (+) Length   317 a.a.
NCBI ID   WP_059366593.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434511..445464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS02015 (BAJP3042_02015) - 434558..435991 (+) 1434 WP_162183162.1 HAMP domain-containing sensor histidine kinase -
  BAJP3042_RS02020 (BAJP3042_02020) rapC 436144..437292 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  BAJP3042_RS02025 (BAJP3042_02025) phrC 437276..437395 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAJP3042_RS02030 (BAJP3042_02030) - 437543..437653 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  BAJP3042_RS02035 (BAJP3042_02035) - 437733..439097 (-) 1365 WP_042634827.1 aspartate kinase -
  BAJP3042_RS02040 (BAJP3042_02040) ceuB 439511..440464 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  BAJP3042_RS02045 (BAJP3042_02045) - 440454..441401 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  BAJP3042_RS02050 (BAJP3042_02050) - 441395..442153 (+) 759 WP_063096189.1 ABC transporter ATP-binding protein -
  BAJP3042_RS02055 (BAJP3042_02055) - 442175..443119 (+) 945 WP_063096191.1 siderophore ABC transporter substrate-binding protein -
  BAJP3042_RS02060 (BAJP3042_02060) - 443161..444585 (-) 1425 WP_063096193.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=600422 BAJP3042_RS02040 WP_059366593.1 439511..440464(+) (ceuB) [Bacillus amyloliquefaciens strain JP3042]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=600422 BAJP3042_RS02040 WP_059366593.1 439511..440464(+) (ceuB) [Bacillus amyloliquefaciens strain JP3042]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTTTTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCGCTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536