Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   BAJP3042_RS02025 Genome accession   NZ_CP082243
Coordinates   437276..437395 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 432276..442395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS02010 (BAJP3042_02010) - 433888..434571 (+) 684 WP_222835650.1 response regulator transcription factor -
  BAJP3042_RS02015 (BAJP3042_02015) - 434558..435991 (+) 1434 WP_162183162.1 HAMP domain-containing sensor histidine kinase -
  BAJP3042_RS02020 (BAJP3042_02020) rapC 436144..437292 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  BAJP3042_RS02025 (BAJP3042_02025) phrC 437276..437395 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAJP3042_RS02030 (BAJP3042_02030) - 437543..437653 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  BAJP3042_RS02035 (BAJP3042_02035) - 437733..439097 (-) 1365 WP_042634827.1 aspartate kinase -
  BAJP3042_RS02040 (BAJP3042_02040) ceuB 439511..440464 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  BAJP3042_RS02045 (BAJP3042_02045) - 440454..441401 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  BAJP3042_RS02050 (BAJP3042_02050) - 441395..442153 (+) 759 WP_063096189.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=600421 BAJP3042_RS02025 WP_003156334.1 437276..437395(+) (phrC) [Bacillus amyloliquefaciens strain JP3042]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=600421 BAJP3042_RS02025 WP_003156334.1 437276..437395(+) (phrC) [Bacillus amyloliquefaciens strain JP3042]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718