Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BAJP3042_RS02020 Genome accession   NZ_CP082243
Coordinates   436144..437292 (+) Length   382 a.a.
NCBI ID   WP_007410270.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 431144..442292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS02000 (BAJP3042_02000) - 431565..432248 (-) 684 WP_114354851.1 ABC transporter ATP-binding protein -
  BAJP3042_RS02005 (BAJP3042_02005) - 432263..433675 (-) 1413 WP_222835649.1 ABC transporter permease -
  BAJP3042_RS02010 (BAJP3042_02010) - 433888..434571 (+) 684 WP_222835650.1 response regulator transcription factor -
  BAJP3042_RS02015 (BAJP3042_02015) - 434558..435991 (+) 1434 WP_162183162.1 HAMP domain-containing sensor histidine kinase -
  BAJP3042_RS02020 (BAJP3042_02020) rapC 436144..437292 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  BAJP3042_RS02025 (BAJP3042_02025) phrC 437276..437395 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAJP3042_RS02030 (BAJP3042_02030) - 437543..437653 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  BAJP3042_RS02035 (BAJP3042_02035) - 437733..439097 (-) 1365 WP_042634827.1 aspartate kinase -
  BAJP3042_RS02040 (BAJP3042_02040) ceuB 439511..440464 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  BAJP3042_RS02045 (BAJP3042_02045) - 440454..441401 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  BAJP3042_RS02050 (BAJP3042_02050) - 441395..442153 (+) 759 WP_063096189.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45475.70 Da        Isoelectric Point: 4.9916

>NTDB_id=600420 BAJP3042_RS02020 WP_007410270.1 436144..437292(+) (rapC) [Bacillus amyloliquefaciens strain JP3042]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=600420 BAJP3042_RS02020 WP_007410270.1 436144..437292(+) (rapC) [Bacillus amyloliquefaciens strain JP3042]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTATTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.461

100

0.825
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568