Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K5Y35_RS15475 Genome accession   NZ_CP082236
Coordinates   3465943..3468177 (+) Length   744 a.a.
NCBI ID   WP_222832297.1    Uniprot ID   -
Organism   Pseudomonas sp. SC3(2021)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3460943..3473177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Y35_RS15450 - 3461955..3462614 (+) 660 WP_222832294.1 transglutaminase-like domain-containing protein -
  K5Y35_RS15455 - 3462658..3463281 (+) 624 WP_123466836.1 glutathione S-transferase family protein -
  K5Y35_RS15460 - 3463415..3464347 (+) 933 WP_222832295.1 ABC transporter ATP-binding protein -
  K5Y35_RS15465 - 3464344..3465123 (+) 780 WP_222832296.1 ABC transporter permease -
  K5Y35_RS15470 - 3465288..3465806 (-) 519 WP_123466830.1 DUF2062 domain-containing protein -
  K5Y35_RS15475 comA 3465943..3468177 (+) 2235 WP_222832297.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5Y35_RS15480 exbB 3468279..3468914 (+) 636 WP_123466826.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K5Y35_RS15485 - 3468911..3469339 (+) 429 WP_123466824.1 ExbD/TolR family protein -
  K5Y35_RS15490 lpxK 3469339..3470349 (+) 1011 WP_186744949.1 tetraacyldisaccharide 4'-kinase -
  K5Y35_RS15495 - 3470371..3470556 (+) 186 WP_003174668.1 Trm112 family protein -
  K5Y35_RS15500 kdsB 3470553..3471317 (+) 765 WP_222832298.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5Y35_RS15505 - 3471317..3471781 (+) 465 WP_123466818.1 low molecular weight protein-tyrosine-phosphatase -
  K5Y35_RS15510 murB 3471778..3472797 (+) 1020 WP_222832299.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81723.12 Da        Isoelectric Point: 10.5080

>NTDB_id=600359 K5Y35_RS15475 WP_222832297.1 3465943..3468177(+) (comA) [Pseudomonas sp. SC3(2021)]
MRTGMMALAVGLLVPLFMPALPPVGVVVLLPVVALMVLPFRSYPVAFLLFGFTWSCVGAQWALNDRLSPVLDGETRWIEG
RVTGLPQTSDGVVRFELADARSRHEKLPTLLRLAWYAGPPVNSGERWRLAVKFKRPGGLLNPDAFDHEAWLLAQRVGATG
TVKDGQRLREAHWAWRDSIRQRVLAVDAQGRAGALAALVLGDGSGLSREDWRILQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARLGVWPLRWPWLPWACGLAFAAALGYALLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
AGLRPGLWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLVVLPPAL
LGTVLLPLPYVGEGLLWLAGVLIDGLFRGLALIAGHWPAWVAASMPVWVWAIGALGALLLLLPRGVPMRILGWPLLLILA
LPPREPLAHGLADVWQLDVGQGLAILIRTRHHTLLYDAGPRFGDFDLGERVVVPALRKLRVEHIDLMMLSHADADHAGGA
LAITRGLPVARVISGDPPGLPAELSAQACESGQQWQWDGVRFRLWQWADADDSNQRSCVLQVEANGERLLLTGDIDLHAE
RVLLDSALAVPTQWLQAPHHGSRTSSSMALLKVLNPETVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEHGAIHLQL
GRFKPARTMRQHRRFWRDSPVLAR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=600359 K5Y35_RS15475 WP_222832297.1 3465943..3468177(+) (comA) [Pseudomonas sp. SC3(2021)]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGTGCCGCTTTTTATGCCGGCGTTACCGCCGGTCGGGGTCGT
GGTGCTGCTGCCGGTGGTGGCGTTGATGGTGTTGCCGTTTCGCAGCTATCCAGTGGCGTTTCTGCTTTTCGGCTTCACCT
GGAGCTGCGTCGGTGCGCAGTGGGCGTTGAATGATCGACTCTCGCCAGTGCTGGACGGCGAAACCCGCTGGATCGAAGGG
CGGGTGACGGGATTGCCGCAAACCAGCGATGGCGTCGTGCGCTTCGAACTTGCCGATGCCCGCTCGCGTCACGAGAAACT
GCCAACGTTGCTGCGGCTGGCCTGGTATGCCGGGCCACCGGTCAACAGCGGCGAGCGCTGGCGATTGGCGGTGAAGTTCA
AGCGCCCCGGCGGGCTGCTCAATCCGGATGCCTTCGATCATGAAGCCTGGTTGTTGGCCCAACGCGTCGGTGCGACCGGC
ACGGTCAAGGACGGGCAGCGTCTGCGCGAGGCACACTGGGCCTGGCGTGACAGCATTCGCCAGCGTGTGCTGGCGGTGGA
TGCGCAGGGGCGGGCCGGAGCGCTGGCGGCTTTGGTGCTGGGTGACGGCTCGGGGCTCAGTCGCGAAGATTGGCGCATTC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATTTCCGGCCAGCACATCGGCCTGTTGGCGGCGGTCATGTACCTGTTG
GTCGCCGGGTTGGCCCGTCTGGGCGTATGGCCACTGCGCTGGCCATGGCTGCCGTGGGCCTGCGGTCTGGCGTTCGCGGC
GGCGCTCGGCTACGCGTTGCTGGCCGGGTTTGACGTGCCGGTGCAACGCGCCTGCGTGATGGTGGGGCTGGTGTTGCTGT
GGCGCCTGCGCTTTCGTCATCTGGGCGCGTGGTGGCCGCTGTTGCTGGCGTTCAATGGCGTGCTGTTGCTCGATCCACTG
GCCGGGTTGCGGCCGGGGTTGTGGCTGTCCTTCGCGGCAGTGGCGGTGCTGATCTTCACCTTTGGCGGACGCCTCGGTGC
CTGGCGCTGGTGGCAGACTTGGACACGGGCGCAATGGCTGATTGCGATCGGTTTGTGTCCGGTGTTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGGCCGTTGGCGAATCTGTTGGCGGTGCCTTGGGTCAGTCTGGTGGTGCTGCCACCCGCGCTG
CTTGGCACGGTGTTGTTACCGCTGCCGTATGTCGGCGAAGGCTTGCTGTGGCTGGCGGGTGTCTTGATCGACGGGCTGTT
TCGCGGGCTGGCGCTCATTGCCGGACACTGGCCGGCCTGGGTGGCAGCTTCGATGCCGGTGTGGGTCTGGGCGATCGGCG
CACTTGGCGCGTTGCTGTTGCTGCTGCCGCGAGGCGTGCCCATGAGGATTTTGGGCTGGCCACTACTGCTGATCCTGGCG
CTGCCGCCACGCGAGCCACTGGCACACGGCCTGGCGGATGTCTGGCAATTGGATGTTGGCCAGGGCCTGGCGATTCTGAT
CCGCACGCGTCATCACACGTTGCTGTATGACGCCGGGCCGCGTTTCGGCGATTTCGACCTCGGTGAACGGGTGGTAGTGC
CGGCGTTGCGCAAACTGCGCGTGGAACACATTGATCTGATGATGCTCAGCCATGCCGACGCCGATCATGCCGGCGGCGCG
CTGGCGATCACACGCGGCTTGCCGGTGGCGCGAGTCATCAGCGGCGATCCGCCGGGCCTGCCTGCCGAATTGAGTGCCCA
AGCCTGCGAAAGTGGACAGCAGTGGCAGTGGGATGGCGTCCGTTTTCGTCTCTGGCAATGGGCCGATGCCGACGACAGCA
ACCAGCGTTCCTGCGTGTTGCAGGTCGAGGCCAATGGCGAGCGCCTGTTGCTCACCGGCGACATTGACCTTCACGCCGAA
CGGGTTCTGCTCGACAGCGCGCTGGCAGTCCCGACCCAATGGCTGCAGGCCCCCCATCACGGCAGCCGCACCTCTTCCTC
GATGGCCCTGCTCAAAGTGTTGAATCCTGAAACGGTGCTGATTTCCCGCGGCCACGGCAATTCGTTCGGCCATCCTCATC
CGACGGTACTGGCGCGCTATCGCAAACAGGGCCTGCGCATTTACGACAGCGCCGAGCACGGCGCGATTCATCTGCAACTG
GGCAGGTTCAAACCGGCGCGGACGATGCGTCAACACCGGCGTTTCTGGCGTGATTCGCCAGTATTGGCCCGTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(40-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.528

96.774

0.595
  comA Ralstonia pseudosolanacearum GMI1000

35.088

100

0.376