Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K5Y35_RS15480 Genome accession   NZ_CP082236
Coordinates   3468279..3468914 (+) Length   211 a.a.
NCBI ID   WP_123466826.1    Uniprot ID   -
Organism   Pseudomonas sp. SC3(2021)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3463279..3473914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Y35_RS15460 - 3463415..3464347 (+) 933 WP_222832295.1 ABC transporter ATP-binding protein -
  K5Y35_RS15465 - 3464344..3465123 (+) 780 WP_222832296.1 ABC transporter permease -
  K5Y35_RS15470 - 3465288..3465806 (-) 519 WP_123466830.1 DUF2062 domain-containing protein -
  K5Y35_RS15475 comA 3465943..3468177 (+) 2235 WP_222832297.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5Y35_RS15480 exbB 3468279..3468914 (+) 636 WP_123466826.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K5Y35_RS15485 - 3468911..3469339 (+) 429 WP_123466824.1 ExbD/TolR family protein -
  K5Y35_RS15490 lpxK 3469339..3470349 (+) 1011 WP_186744949.1 tetraacyldisaccharide 4'-kinase -
  K5Y35_RS15495 - 3470371..3470556 (+) 186 WP_003174668.1 Trm112 family protein -
  K5Y35_RS15500 kdsB 3470553..3471317 (+) 765 WP_222832298.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5Y35_RS15505 - 3471317..3471781 (+) 465 WP_123466818.1 low molecular weight protein-tyrosine-phosphatase -
  K5Y35_RS15510 murB 3471778..3472797 (+) 1020 WP_222832299.1 UDP-N-acetylmuramate dehydrogenase -
  K5Y35_RS15515 - 3473108..3473578 (+) 471 WP_123466814.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22929.01 Da        Isoelectric Point: 6.8771

>NTDB_id=600360 K5Y35_RS15480 WP_123466826.1 3468279..3468914(+) (exbB) [Pseudomonas sp. SC3(2021)]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAGRVIHELERYVNALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGERA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=600360 K5Y35_RS15480 WP_123466826.1 3468279..3468914(+) (exbB) [Pseudomonas sp. SC3(2021)]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTGTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGTGAAATCCTTGCCGCGGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGGGCGGGTGATCCACGAGCTCGAGCGCTACGT
CAACGCGCTGGGCACCATTGCTGCCATGGCGCCGCTGCTCGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGCTCCGGCATGACCACCAATGCATCAGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGAAAGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834