Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   NDN18_RS02040 Genome accession   NZ_CP098521
Coordinates   424697..426742 (-) Length   681 a.a.
NCBI ID   WP_000204958.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Cl107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 419697..431742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN18_RS02005 (NDN18_02005) - 420181..420861 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  NDN18_RS02010 (NDN18_02010) - 420888..421529 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  NDN18_RS02015 (NDN18_02015) - 421541..421828 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  NDN18_RS02020 (NDN18_02020) - 421898..422911 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  NDN18_RS02025 (NDN18_02025) - 423069..423650 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  NDN18_RS02030 (NDN18_02030) - 423665..424066 (+) 402 WP_000849701.1 NUDIX domain-containing protein -
  NDN18_RS02035 (NDN18_02035) comF 424069..424704 (-) 636 WP_000472261.1 ComF family protein Machinery gene
  NDN18_RS02040 (NDN18_02040) recG 424697..426742 (-) 2046 WP_000204958.1 ATP-dependent DNA helicase RecG Machinery gene
  NDN18_RS02045 (NDN18_02045) - 426763..427578 (+) 816 WP_000547780.1 NAD-dependent epimerase/dehydratase family protein -
  NDN18_RS02050 (NDN18_02050) adeT2 427658..428644 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  NDN18_RS02055 (NDN18_02055) plsB 428688..431258 (-) 2571 WP_000045410.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 76421.03 Da        Isoelectric Point: 7.9534

>NTDB_id=600313 NDN18_RS02040 WP_000204958.1 424697..426742(-) (recG) [Acinetobacter baumannii strain Cl107]
MTSVHQLQGVGSASAALLEKLNIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGEVKSVDFPPGKRKSMAALIQD
EFGKVTLRFYHIYKNLTDKIKPGNRLRIFGEVRVGARGLELYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQAKLREYVK
QALKHHSDALPELLPKQYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLLTRRAYIRQIASPA
FPSSKVLAKKLLEALPFQMTNAQKRVSKEILSDLKQHQPMLRLVQGDVGAGKTLVAAVAACHALEADWQVALMAPTEILA
EQHYLNFKRWFEPLGIKVAWLSGKQKGKARAHAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLAL
RNKGAEQLTPHQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLHRIASNCREGKQAYWVCTL
VEQSETLDAQAAEATYQEMKERFPDLNIGLVHGKMKADEKQAVMQAFKNNELQLLIATTVIEVGVDVPNASIMVIENAER
LGLSQLHQLRGRVGRGAKASFCVLLYKPPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLE
RDDHLLSQAHYVAQQVLKDYPEQADALLKRWLPEAPRYAYV

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=600313 NDN18_RS02040 WP_000204958.1 424697..426742(-) (recG) [Acinetobacter baumannii strain Cl107]
ATGACTTCAGTCCATCAGTTACAAGGCGTTGGATCGGCTTCAGCAGCCCTACTCGAAAAACTAAATATTTTTACCACAGA
TGATTTGCTGTTTCATCTGCCCCGTGATTATGAAGATCGCAGTACCATTATTCCTATGAATCAATTGGTAGTTGGTCGTA
GTTATTTACTCGAGGGTGAAGTCAAATCTGTTGATTTCCCTCCAGGTAAACGTAAATCTATGGCCGCATTAATACAAGAT
GAATTTGGTAAGGTGACTTTACGCTTTTATCATATTTATAAAAATTTAACCGACAAAATAAAACCTGGTAACCGTTTACG
TATTTTTGGTGAAGTTCGTGTAGGTGCACGAGGGCTTGAGCTTTATCATCCAGAAATTCAACTTATTAATGAACATACCC
CCCTTCCAAAAACGCAGCTCACAGCAATTTATCCAAGTACCGATGGACTAACACAAGCTAAATTACGCGAATATGTTAAA
CAAGCGTTGAAACATCATAGTGATGCCTTACCCGAGTTACTCCCTAAACAATATACAAATGGGTATGCACTCAAAGAAGC
TTTACATTACATTCATGAGCCACCAGTTGATGCCAATATGATCCAATTGGCTCAAGGCTCTCATCCTGCGCAGCAACGTC
TTATTTTTGAAGAGCTGGTCGCACATCAAATTAGTCTTCTCACTCGACGTGCTTATATTCGACAAATTGCTTCACCTGCT
TTTCCGAGTAGTAAAGTACTTGCAAAAAAACTGCTAGAAGCTTTACCTTTTCAAATGACCAACGCACAAAAACGTGTATC
AAAAGAAATTTTAAGCGACTTAAAACAACATCAACCTATGCTGCGTTTGGTACAAGGTGATGTAGGGGCTGGAAAAACTT
TAGTTGCAGCGGTTGCAGCATGTCATGCATTGGAAGCAGATTGGCAAGTTGCGTTAATGGCACCCACCGAAATTTTAGCA
GAGCAGCATTATTTAAATTTTAAACGCTGGTTTGAACCTTTAGGTATTAAGGTAGCTTGGTTGTCGGGTAAACAAAAAGG
GAAAGCGCGGGCACACGCTGAGCAACAAATTAAAGAAGGCCATGCTGAACTAATTGTGGGTACTCATGCCTTATTTCAAG
ATAACGTTGAATTTGCAAAACTAGGACTCGTGATTATTGATGAACAGCACCGATTCGGGGTCGATCAGCGATTAGCCTTA
CGCAATAAAGGCGCCGAACAGCTCACCCCACATCAACTGGTCATGACTGCAACGCCAATTCCTAGAACACTGGCAATGAG
TGCTTATGGCGATTTAGATACATCGATTATTGATGAATTACCCCCAGGCCGAACTCCAATTCAGACCGTCACGATTCCTC
TAGATCGTCGTGAAGAAGTACTGCATCGAATTGCTTCCAACTGCCGAGAAGGTAAACAAGCCTACTGGGTATGTACTCTG
GTTGAACAGTCCGAAACTTTAGATGCTCAAGCTGCCGAAGCCACCTATCAAGAAATGAAAGAGCGCTTTCCTGATCTTAA
TATTGGTTTGGTTCATGGCAAAATGAAAGCCGATGAAAAACAGGCTGTCATGCAAGCATTTAAAAACAATGAACTACAGC
TGCTAATTGCCACAACTGTTATTGAGGTTGGTGTAGATGTACCCAATGCTTCGATTATGGTCATTGAGAATGCTGAACGA
TTAGGGCTTTCACAGCTACACCAATTACGAGGGCGTGTAGGACGAGGTGCAAAAGCCAGTTTTTGTGTTCTTCTCTATAA
ACCACCACTTTCACAAAATGGGCAAGAAAGACTTTCAATTTTAAGAGAAAGTAATGATGGCTTTGTTATTGCTGAAAAAG
ATCTTGAGCTAAGAGGCCCGGGTGAGTTATTAGGAACAAAACAAACAGGTGATATGGGTTTCCGTGTCGCACGTTTAGAG
CGAGATGATCATTTATTGAGTCAAGCACACTACGTTGCACAACAAGTTCTAAAAGATTACCCTGAGCAAGCTGATGCCTT
ATTGAAGCGCTGGCTTCCCGAAGCTCCTCGATACGCATATGTTTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(605-663)

DEAD/DEAH box helicase (DEAD)

(261-422)

RecG wedge domain (RecG_wedge)

(7-163)

Helicase conserved C-terminal domain (Helicase_C)

(466-576)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.776

98.238

0.489
  recG/mmsA Streptococcus pneumoniae R6

41.654

97.651

0.407
  recG/mmsA Streptococcus pneumoniae R36A

41.654

97.651

0.407
  recG Bacillus subtilis subsp. subtilis str. 168

38.574

100

0.389