Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6978_RS15680 Genome accession   NZ_CP082214
Coordinates   3544955..3546013 (-) Length   352 a.a.
NCBI ID   WP_104602515.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain OH_261     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3539955..3551013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6978_RS15660 (K6978_15590) - 3541042..3543006 (-) 1965 WP_104602511.1 type IV pilus secretin PilQ family protein -
  K6978_RS15665 (K6978_15595) - 3543026..3543559 (-) 534 WP_104602512.1 pilus assembly protein PilP -
  K6978_RS15670 (K6978_15600) - 3543556..3544221 (-) 666 WP_104602513.1 type 4a pilus biogenesis protein PilO -
  K6978_RS15675 (K6978_15605) - 3544218..3544955 (-) 738 WP_104602514.1 PilN domain-containing protein -
  K6978_RS15680 (K6978_15610) comM 3544955..3546013 (-) 1059 WP_104602515.1 pilus assembly protein PilM Machinery gene
  K6978_RS15685 (K6978_15615) - 3546132..3548654 (+) 2523 WP_274396507.1 penicillin-binding protein 1A -
  K6978_RS15690 (K6978_15620) - 3548899..3549546 (+) 648 WP_104602517.1 hypothetical protein -
  K6978_RS15695 (K6978_15625) - 3549720..3551009 (-) 1290 WP_274396508.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37664.25 Da        Isoelectric Point: 4.3924

>NTDB_id=600239 K6978_RS15680 WP_104602515.1 3544955..3546013(-) (comM) [Xanthomonas cucurbitae strain OH_261]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKARNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVSSELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=600239 K6978_RS15680 WP_104602515.1 3544955..3546013(-) (comM) [Xanthomonas cucurbitae strain OH_261]
GTGGGGCTTCTACCCAAGAGTCAGTCGCCACTGATCGGTGTCGATATCAGTTCCACTGCGGTCAAGCTGTTGCAGCTGTC
GCGCAGCGGGAACCGTTTCCGCGTGGAACACTACGCGGTGGAACCATTGCCGCCGAATGCGGTGGTAGAAAAGAACATCG
TCGAAGTGGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAGGAACGCGGCGGCGGCC
GTGGCCGGCTCGGCGGTCATCACCAAGCTGATCCCGATGCCCGCCGACCTGGACGACAGCGATCTGGAAGCGCAGGTCGA
GCTGGAGGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCTTCGCGCTCGGAGAACGTGGAGCTGCGCCAGTCGGCGCTGGAACTGGGC
GGCCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTTTCCAGCGAACTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCCGGCCGTAGCC
TGTACAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTATGGCCTGACCTACGAAGAG
GCCGGCCTGGCCAAGCGCCAGGGTGGCTTGCCGGAAAGCTACGAGGTCGAGGTGCTTGAGCCGTTCAAGGAGGCGACTGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAATCGCGTGGACTGCATCGTGCTGGCCGGCG
GCTGCGCTGCGCTGTCGCGCCTGCCGGAGATGGTCGAAGAACAGCTGGGGGTGACCACCGTGGTGGCCAACCCGCTCGCA
CAGATGACGCTGGGTCCCAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCCGCCCTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.712

99.716

0.506
  pilM Legionella pneumophila strain ERS1305867

46.724

99.716

0.466