Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K6978_RS08065 Genome accession   NZ_CP082214
Coordinates   1768829..1769863 (+) Length   344 a.a.
NCBI ID   WP_104601631.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain OH_261     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1763829..1774863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6978_RS08050 (K6978_08045) - 1765247..1765741 (+) 495 WP_104601633.1 CinA family protein -
  K6978_RS08055 (K6978_08050) ubiB 1766256..1767932 (+) 1677 WP_104601799.1 2-polyprenylphenol 6-hydroxylase -
  K6978_RS08060 (K6978_08055) lexA 1768012..1768656 (+) 645 WP_104601632.1 transcriptional repressor LexA -
  K6978_RS08065 (K6978_08060) recA 1768829..1769863 (+) 1035 WP_104601631.1 recombinase RecA Machinery gene
  K6978_RS08070 (K6978_08065) recX 1770122..1770610 (+) 489 WP_104601630.1 recombination regulator RecX -
  K6978_RS08075 (K6978_08070) alaS 1770712..1773360 (+) 2649 WP_274397086.1 alanine--tRNA ligase -
  K6978_RS08080 (K6978_08075) csrA 1773500..1773712 (+) 213 WP_003481884.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37072.68 Da        Isoelectric Point: 5.2050

>NTDB_id=600228 K6978_RS08065 WP_104601631.1 1768829..1769863(+) (recA) [Xanthomonas cucurbitae strain OH_261]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQGKDNARGYLRDNPQVAVKL
EAELREKFQPAEAPREAGDDAEKE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=600228 K6978_RS08065 WP_104601631.1 1768829..1769863(+) (recA) [Xanthomonas cucurbitae strain OH_261]
ATGGACGAGAACAAGAAGCGCGCCCTTTCCGCCGCACTGAGCCAGATCGAAAAGCAATTCGGCAAGGGGTCGGTCATGCG
CATGGGCGACCGCGTGATCGAGGCGGTCGAGGTCATTCCGACCGGCTCGCTGATGTTGGACATCGCACTGGGAATCGGCG
GCCTGCCCAAGGGCCGCGTAGTGGAAATCTACGGCCCTGAATCCTCGGGCAAGACCACCTTGACCCTGCAGGCGATTGCC
GAATGCCAGAAGAAGGGCGGCACGGCGGCCTTCATCGATGCCGAGCACGCGCTGGATCCGATCTACGCCGCCAAGTTGGG
CGTCAATGTGGATGACCTGCTGCTGTCGCAGCCGGATACCGGTGAGCAGGCATTGGAAATCGCCGACATGCTGGTGCGTT
CGGGCTCGGTCGACATCGTGGTGGTCGACTCGGTGGCGGCGTTGACGCCCAAGGCGGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGTAAGCTCACCGGCAACATCAAGCGCTCCAACACGCT
GGTGGTGTTCATCAACCAGCTGCGCATGAAGATCGGCGTCATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ATGCCCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTGGTCACCGAAATTCTCTACGGCGA
GGGCATCAGCCGCGAGGGCGAGTTGATCGACATGGGTGTGGAAGCCAAGCTGGTGGACAAGGCCGGCGCCTGGTACAGCT
ACGGCGACGAGCGCATCGGTCAGGGCAAGGACAACGCGCGTGGTTACCTGCGCGATAACCCGCAGGTGGCGGTCAAGCTG
GAAGCGGAGCTGCGCGAGAAGTTCCAGCCCGCCGAGGCGCCGCGCGAAGCAGGCGACGACGCCGAGAAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.058

100

0.701
  recA Pseudomonas stutzeri DSM 10701

70.175

99.419

0.698
  recA Acinetobacter baumannii D1279779

71.951

95.349

0.686
  recA Ralstonia pseudosolanacearum GMI1000

75.399

90.988

0.686
  recA Vibrio cholerae strain A1552

70.859

94.767

0.672
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.859

94.767

0.672
  recA Glaesserella parasuis strain SC1401

65.407

100

0.654
  recA Neisseria gonorrhoeae MS11

68.712

94.767

0.651
  recA Neisseria gonorrhoeae MS11

68.712

94.767

0.651
  recA Neisseria gonorrhoeae strain FA1090

68.712

94.767

0.651
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

97.093

0.616
  recA Latilactobacillus sakei subsp. sakei 23K

62.275

97.093

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.3

92.151

0.602
  recA Helicobacter pylori strain NCTC11637

61.747

96.512

0.596
  recA Helicobacter pylori 26695

61.446

96.512

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.477

0.593
  recA Streptococcus mitis SK321

61.28

95.349

0.584
  recA Streptococcus pneumoniae Rx1

61.28

95.349

0.584
  recA Streptococcus pneumoniae D39

61.28

95.349

0.584
  recA Streptococcus pneumoniae R6

61.28

95.349

0.584
  recA Streptococcus pneumoniae TIGR4

61.28

95.349

0.584
  recA Streptococcus mitis NCTC 12261

60.976

95.349

0.581
  recA Streptococcus pyogenes NZ131

60.606

95.93

0.581
  recA Streptococcus mutans UA159

60.303

95.93

0.578
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.477

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.485

95.93

0.561