Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K6973_RS09495 Genome accession   NZ_CP082206
Coordinates   1909781..1910272 (-) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus dysgalactiae strain DY107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1904781..1915272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS09480 (K6973_09480) - 1907555..1908499 (+) 945 WP_222819303.1 magnesium transporter CorA family protein -
  K6973_RS09485 (K6973_09485) - 1908632..1909291 (+) 660 WP_222819304.1 DUF1129 domain-containing protein -
  K6973_RS09490 (K6973_09490) rpsR 1909424..1909663 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  K6973_RS09495 (K6973_09495) ssbA 1909781..1910272 (-) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  K6973_RS09500 (K6973_09500) rpsF 1910294..1910584 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  K6973_RS09505 (K6973_09505) - 1912022..1912315 (-) 294 WP_003052683.1 hypothetical protein -
  K6973_RS09510 (K6973_09510) mutY 1912481..1913647 (+) 1167 WP_222819305.1 A/G-specific adenine glycosylase -
  K6973_RS09515 (K6973_09515) trxA 1913698..1914012 (-) 315 WP_003052691.1 thioredoxin -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=600123 K6973_RS09495 WP_002993238.1 1909781..1910272(-) (ssbA) [Streptococcus dysgalactiae strain DY107]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=600123 K6973_RS09495 WP_002993238.1 1909781..1910272(-) (ssbA) [Streptococcus dysgalactiae strain DY107]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCAC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGTAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368