Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   K6969_RS03755 Genome accession   NZ_CP082205
Coordinates   743882..744685 (+) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 738882..749685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS03730 (K6969_03670) - 739311..740009 (-) 699 WP_004298848.1 amino acid ABC transporter permease -
  K6969_RS03735 (K6969_03675) - 740024..740863 (-) 840 WP_029174361.1 transporter substrate-binding domain-containing protein -
  K6969_RS03740 (K6969_03680) - 740874..741635 (-) 762 WP_171942725.1 amino acid ABC transporter ATP-binding protein -
  K6969_RS03745 (K6969_03685) micA 741829..742533 (+) 705 WP_004298854.1 response regulator YycF Regulator
  K6969_RS03750 (K6969_03690) micB 742526..743875 (+) 1350 WP_024379730.1 cell wall metabolism sensor histidine kinase VicK Regulator
  K6969_RS03755 (K6969_03695) vicX 743882..744685 (+) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  K6969_RS03760 (K6969_03700) vga(F) 745047..746432 (+) 1386 WP_253911801.1 ABC-F type ribosomal protection protein Vga(F) -
  K6969_RS03765 (K6969_03705) pbp2b 746524..748596 (+) 2073 WP_171942726.1 penicillin-binding protein PBP2B -
  K6969_RS03770 (K6969_03710) recR 748605..749201 (+) 597 WP_002935848.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=600044 K6969_RS03755 WP_002935843.1 743882..744685(+) (vicX) [Streptococcus suis strain AKJ18]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=600044 K6969_RS03755 WP_002935843.1 743882..744685(+) (vicX) [Streptococcus suis strain AKJ18]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTCTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGGGCTATGAAGACCTTTGGCGACCTAGATATTGAGTCGTTTGGAGTTAGCCATGATGCTGCATGCCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGCTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
GCTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772