Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K6972_RS08665 Genome accession   NZ_CP082203
Coordinates   1764630..1765124 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain NJ3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1759630..1770124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS08650 (K6972_08650) - 1762356..1763300 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  K6972_RS08655 (K6972_08655) - 1763316..1763972 (+) 657 WP_024385182.1 DUF1129 domain-containing protein -
  K6972_RS08660 (K6972_08660) rpsR 1764358..1764597 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  K6972_RS08665 (K6972_08665) ssbA 1764630..1765124 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  K6972_RS08670 (K6972_08670) rpsF 1765136..1765426 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  K6972_RS08675 (K6972_08675) - 1765597..1766586 (-) 990 WP_014736331.1 lipoate--protein ligase -
  K6972_RS08680 (K6972_08680) - 1766716..1767876 (+) 1161 WP_024406581.1 DUF6688 family protein -
  K6972_RS08685 (K6972_08685) - 1767913..1769352 (-) 1440 WP_024406580.1 6-phospho-beta-glucosidase -
  K6972_RS08690 (K6972_08690) - 1769367..1769969 (-) 603 WP_222812507.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=599949 K6972_RS08665 WP_002942409.1 1764630..1765124(-) (ssbA) [Streptococcus suis strain NJ3]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=599949 K6972_RS08665 WP_002942409.1 1764630..1765124(-) (ssbA) [Streptococcus suis strain NJ3]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACTGGTCGTATCCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCACCTTATCAAG
CACCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGCAATCCAATGGACATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366