Detailed information NTG0599943

Bioinformatically predicted

Overview

• Name: ccpA
• Type: Regulator
• Locus tag: K6972_RS07490
• Genome accession: NZ_CP082203
• Coordinates: 1515636..1516640 (-)
• Length: 334 a.a.
• NCBI ID: WP_004298830.1
• Uniprot ID: -
• Organism: Streptococcus suis strain NJ3
• Function: regulate comCDE transcription and transformation (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1508068..1522296	1515636..1516640	within	0

Gene organization within MGE regions

Location: 1508068..1522296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6972_RS10760 (K6972_07470)	-	1508088..1512146 (-)	4059	Protein_1439	Ig-like domain-containing protein	-
K6972_RS07480 (K6972_07480)	-	1512535..1513917 (-)	1383	WP_105242417.1	HAMP domain-containing sensor histidine kinase	-
K6972_RS07485 (K6972_07485)	-	1513918..1514568 (-)	651	WP_024384330.1	response regulator transcription factor	-
K6972_RS07490 (K6972_07490)	ccpA	1515636..1516640 (-)	1005	WP_004298830.1	catabolite control protein A	Regulator
K6972_RS07495 (K6972_07495)	-	1516850..1517935 (+)	1086	WP_222812438.1	Xaa-Pro peptidase family protein	-
K6972_RS10700	-	1518108..1518320 (-)	213	WP_315984686.1	LPXTG cell wall anchor domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36786.97 Da
• Isoelectric Point: 5.5173

>NTDB_id=599943 K6972_RS07490 WP_004298830.1 1515636..1516640(-) (ccpA) [Streptococcus suis strain NJ3]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide

• Length: 1005 bp

>NTDB_id=599943 K6972_RS07490 WP_004298830.1 1515636..1516640(-) (ccpA) [Streptococcus suis strain NJ3]
ATGTTAAACACTGACGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCGA
ATGCTGTTGCACGTGGCTTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAATATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTGGTAAATACCCTGTTCTCAAAACAGGTGGACGGAATCATTTTCATGGGTTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGATTTGGAGCACCAATTACCT
AGTGTCAATATTGACTATGCTGCCGCTAGTGTTGATGCAGTCAATCTGTTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAATGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGTTTGAAGGACAACGGAATCG
AGTTCAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCA
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCTGGTCTATTGAATGGTGTCAGTGATATGGGCATCAAGGT
TCCAGAAGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACCAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCGCTATACGATATTGGTGCAATTGCTATGCGCATGCTCACCAAAATCATGCATAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (9-54)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-333)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccpA	Streptococcus pneumoniae D39	79.88	99.701	0.796
ccpA	Streptococcus gordonii str. Challis substr. CH1	79.279	99.701	0.79
ccpA	Lactococcus lactis subsp. lactis strain DGCC12653	58.912	99.102	0.584