Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J60_RS03770 Genome accession   NZ_AP018778
Coordinates   732641..733255 (+) Length   204 a.a.
NCBI ID   WP_005656310.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-7 isolate 15H01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 727641..738255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J60_RS03745 (CHBNIII7_07090) - 728058..728576 (-) 519 WP_005688985.1 isoprenylcysteine carboxyl methyltransferase family protein -
  K6J60_RS03750 (CHBNIII7_07100) aspS 728795..730561 (+) 1767 WP_005694347.1 aspartate--tRNA ligase -
  K6J60_RS03755 (CHBNIII7_07110) nudB 730583..731059 (+) 477 WP_162627509.1 dihydroneopterin triphosphate diphosphatase -
  K6J60_RS03760 (CHBNIII7_07120) - 731219..731959 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J60_RS03765 (CHBNIII7_07130) ruvC 732006..732578 (+) 573 WP_005656311.1 crossover junction endodeoxyribonuclease RuvC -
  K6J60_RS03770 (CHBNIII7_07140) ruvA 732641..733255 (+) 615 WP_005656310.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J60_RS03775 (CHBNIII7_07150) ruvB 733263..734270 (+) 1008 WP_005656309.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J60_RS03780 (CHBNIII7_07160) - 734322..734609 (-) 288 WP_005656308.1 DUF5339 domain-containing protein -
  K6J60_RS03785 (CHBNIII7_07170) xerD 734782..735675 (-) 894 WP_005636429.1 site-specific tyrosine recombinase XerD -
  K6J60_RS03790 (CHBNIII7_07180) - 735706..736872 (-) 1167 WP_005656307.1 3-phenylpropionate MFS transporter -
  K6J60_RS03795 (CHBNIII7_07190) proC 736872..737687 (-) 816 WP_221267465.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22612.34 Da        Isoelectric Point: 6.2711

>NTDB_id=59984 K6J60_RS03770 WP_005656310.1 732641..733255(+) (ruvA) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPSVPSIEPSVENS
SDEAISALIALGYKPSEAEKMVKRVAKPELTSEQVIREALKTAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=59984 K6J60_RS03770 WP_005656310.1 732641..733255(+) (ruvA) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTTAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGTCAAGAAACGACTTTATTCACCCATTTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTAGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCGATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GTGTAAAACAAAGTGATTTCTTTGTAGAAAGTACTCATATTCCGTCAGTTCCATCTATTGAACCGAGTGTAGAAAATTCA
TCTGATGAAGCTATTTCAGCCTTGATTGCTTTAGGTTATAAACCTTCAGAAGCAGAAAAAATGGTGAAACGAGTTGCTAA
GCCAGAATTAACCAGTGAACAAGTTATCCGCGAAGCGTTAAAAACCGCACTGTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.634

99.02

0.363
  ruvA Streptococcus pneumoniae R6

36.634

99.02

0.363
  ruvA Streptococcus pneumoniae D39

36.634

99.02

0.363

Multiple sequence alignment