Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | K6J60_RS03775 | Genome accession | NZ_AP018778 |
| Coordinates | 733263..734270 (+) | Length | 335 a.a. |
| NCBI ID | WP_005656309.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain CHBN-III-7 isolate 15H01 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 728263..739270
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J60_RS03750 (CHBNIII7_07100) | aspS | 728795..730561 (+) | 1767 | WP_005694347.1 | aspartate--tRNA ligase | - |
| K6J60_RS03755 (CHBNIII7_07110) | nudB | 730583..731059 (+) | 477 | WP_162627509.1 | dihydroneopterin triphosphate diphosphatase | - |
| K6J60_RS03760 (CHBNIII7_07120) | - | 731219..731959 (+) | 741 | WP_005649034.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| K6J60_RS03765 (CHBNIII7_07130) | ruvC | 732006..732578 (+) | 573 | WP_005656311.1 | crossover junction endodeoxyribonuclease RuvC | - |
| K6J60_RS03770 (CHBNIII7_07140) | ruvA | 732641..733255 (+) | 615 | WP_005656310.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| K6J60_RS03775 (CHBNIII7_07150) | ruvB | 733263..734270 (+) | 1008 | WP_005656309.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| K6J60_RS03780 (CHBNIII7_07160) | - | 734322..734609 (-) | 288 | WP_005656308.1 | DUF5339 domain-containing protein | - |
| K6J60_RS03785 (CHBNIII7_07170) | xerD | 734782..735675 (-) | 894 | WP_005636429.1 | site-specific tyrosine recombinase XerD | - |
| K6J60_RS03790 (CHBNIII7_07180) | - | 735706..736872 (-) | 1167 | WP_005656307.1 | 3-phenylpropionate MFS transporter | - |
| K6J60_RS03795 (CHBNIII7_07190) | proC | 736872..737687 (-) | 816 | WP_221267465.1 | pyrroline-5-carboxylate reductase | - |
| K6J60_RS03800 (CHBNIII7_07200) | rdgC | 737753..738661 (+) | 909 | WP_005689499.1 | recombination-associated protein RdgC | - |
| K6J60_RS03805 (CHBNIII7_07210) | ruvX | 738711..739130 (-) | 420 | WP_005648994.1 | Holliday junction resolvase RuvX | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 37019.40 Da Isoelectric Point: 4.8587
>NTDB_id=59985 K6J60_RS03775 WP_005656309.1 733263..734270(+) (ruvB) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
MIEADRIISVQAKADEEVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
VISVDVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSKTYRHFGLQKLSD
MIEADRIISVQAKADEEVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
VISVDVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSKTYRHFGLQKLSD
Nucleotide
Download Length: 1008 bp
>NTDB_id=59985 K6J60_RS03775 WP_005656309.1 733263..734270(+) (ruvB) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
ATGATTGAAGCAGATAGAATTATTAGCGTGCAAGCTAAGGCTGATGAAGAGGTTATTGACCGCGCTATTCGTCCGAAATT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTGCGTGAGCAAATGGATATTTTCATCAAGGCTGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCCCCTGGTTTGGGAAAAACAACCCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACAACGTCAGGGCCAGTATTAGAAAAAGCGGGCGATTTGGCTGCAATGCTAACTAATCTTGAACCGCA
CGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AATTAGATATTATGATTGGCGAAGGGCCAGCTGCTCGTTCTATTAAATTAGATTTGCCACCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCGCCATTACGTGATCGTTTTGGTATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACCTCTATCGTGGCACGAAGTGCTGGCTGTTTAAATCTTGAATTAGAACAACAGGCCGCTTTTGAGGTGGCTC
GTCGTTCACGAGGCACACCTCGAATTGCAAACCGTTTATTACGACGCGTGCGTGATTATGCAGATGTACGCAATGGGGGA
GTAATTTCGGTAGATGTGGCAAAACAAGCGCTTTCAATGTTGGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
ATTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGACCTGTAGGGCTGGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTTTTAGAGCCTTATTTGATTCAACAGGGTTTTTTACAAAGAACGCCACGTGGACGTATTGCA
ACATCGAAAACTTATCGCCATTTCGGTCTGCAGAAATTATCAGACTAG
ATGATTGAAGCAGATAGAATTATTAGCGTGCAAGCTAAGGCTGATGAAGAGGTTATTGACCGCGCTATTCGTCCGAAATT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTGCGTGAGCAAATGGATATTTTCATCAAGGCTGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCCCCTGGTTTGGGAAAAACAACCCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACAACGTCAGGGCCAGTATTAGAAAAAGCGGGCGATTTGGCTGCAATGCTAACTAATCTTGAACCGCA
CGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AATTAGATATTATGATTGGCGAAGGGCCAGCTGCTCGTTCTATTAAATTAGATTTGCCACCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCGCCATTACGTGATCGTTTTGGTATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACCTCTATCGTGGCACGAAGTGCTGGCTGTTTAAATCTTGAATTAGAACAACAGGCCGCTTTTGAGGTGGCTC
GTCGTTCACGAGGCACACCTCGAATTGCAAACCGTTTATTACGACGCGTGCGTGATTATGCAGATGTACGCAATGGGGGA
GTAATTTCGGTAGATGTGGCAAAACAAGCGCTTTCAATGTTGGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
ATTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGACCTGTAGGGCTGGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTTTTAGAGCCTTATTTGATTCAACAGGGTTTTTTACAAAGAACGCCACGTGGACGTATTGCA
ACATCGAAAACTTATCGCCATTTCGGTCTGCAGAAATTATCAGACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
62.385 |
97.612 |
0.609 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.589 |
97.313 |
0.57 |
| ruvB | Streptococcus pneumoniae R6 |
58.589 |
97.313 |
0.57 |
| ruvB | Streptococcus pneumoniae D39 |
58.589 |
97.313 |
0.57 |
| ruvB | Helicobacter pylori 26695 |
52.727 |
98.507 |
0.519 |
| ruvB | Synechocystis sp. PCC 6803 |
55.34 |
92.239 |
0.51 |