Detailed information NTG0599471

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABWED_RS01435
• Genome accession: NZ_CP082143
• Coordinates: 326021..326881 (-)
• Length: 286 a.a.
• NCBI ID: WP_004281094.1
• Uniprot ID: N9QGW2
• Organism: Acinetobacter lwoffii strain ED23-35
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 321021..331881

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABWED_RS01410 (ABWED_0291)	recN	321158..322819 (-)	1662	WP_004644925.1	DNA repair protein RecN	-
ABWED_RS01415 (ABWED_0293)	-	323262..323585 (+)	324	WP_004281089.1	pyrimidine/purine nucleoside phosphorylase	-
ABWED_RS01420 (ABWED_0294)	rlmB	323720..324469 (+)	750	WP_004281091.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABWED_RS01425 (ABWED_0295)	-	324476..325398 (+)	923	Protein_272	DMT family transporter	-
ABWED_RS01430 (ABWED_0296)	coaE	325420..326019 (-)	600	WP_004281093.1	dephospho-CoA kinase	-
ABWED_RS01435 (ABWED_0297)	pilD	326021..326881 (-)	861	WP_004281094.1	A24 family peptidase	Machinery gene
ABWED_RS01440 (ABWED_0298)	pilC	326881..328110 (-)	1230	WP_004281096.1	type II secretion system F family protein	Machinery gene
ABWED_RS01445 (ABWED_0299)	pilB	328142..329851 (-)	1710	WP_004281098.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABWED_RS01450 (ABWED_0300)	tpiA	330129..330920 (+)	792	WP_004281100.1	triose-phosphate isomerase	-
ABWED_RS01455 (ABWED_0301)	secG	330934..331263 (+)	330	WP_004281101.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32010.35 Da
• Isoelectric Point: 8.0624

>NTDB_id=599471 ABWED_RS01435 WP_004281094.1 326021..326881(-) (pilD) [Acinetobacter lwoffii strain ED23-35]
MHDFLQYFIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQMFLHPEQPVIDETKLSLSKPASACPKCHQP
IRWYQNIPVISWLVLRGKCSNCQNPISIRYPLVEILTAVCALLVVAVFGPTLQMLFGLILTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYALYTLPGAAIWGYIIGFLCLWVVYYAFKIVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=599471 ABWED_RS01435 WP_004281094.1 326021..326881(-) (pilD) [Acinetobacter lwoffii strain ED23-35]
ATGCACGATTTTCTTCAATATTTTATTCAAAACCCAACGGCGTTGTATATCGCAGTTGGGCTTTTTAGTTTATGTATCGG
CAGCTTTCTGAATGTCGTGATTTACCGCACTCCCAAGATGATGGAACAGGAATGGCGTACTGATTGCCAGATGTTCCTGC
ATCCGGAACAGCCGGTGATTGATGAAACTAAGTTAAGTTTAAGCAAACCCGCTTCAGCTTGCCCCAAGTGTCATCAGCCA
ATCCGCTGGTACCAGAATATTCCCGTCATTAGCTGGCTGGTCCTGCGCGGAAAATGTAGCAACTGCCAGAATCCGATCAG
CATCCGTTATCCTTTGGTTGAAATTCTGACGGCAGTTTGTGCACTCCTTGTCGTAGCAGTATTTGGCCCTACCCTACAAA
TGCTGTTTGGCCTGATCCTGACTTATGTGCTGATCGCACTCACTTTTATTGATTTTGACACCCAGTTATTGCCTGACCGT
TATACTTTACCCTTGGCCGCGCTAGGTTTGGGGGTAAATAGTTATGCACTTTATACCTTACCCGGTGCTGCCATCTGGGG
CTATATTATTGGTTTCCTGTGTCTGTGGGTGGTGTATTATGCATTTAAAATCGTTACCGGCAAGGAAGGTATGGGCTATG
GCGATTTTAAATTGCTTGCCGCCCTGGGTGCCTGGATGGGGCCTTTATTACTGCCTTTAATTGTGCTGCTGTCTTCTCTG
GTTGGTGCGATTATCGGGATTATCCTACTGAAAGTCCGCAAGGAAAATCAGCCTTTTGCCTTTGGTCCCTATATCGCGAT
TGCCGGCTGGATTGCTTTTTTGTGGGGCGAGCAGATTATGAAAGTGTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

3D structure

• AlphaFold DB: N9QGW2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	80	99.65	0.797
pilD	Acinetobacter baumannii D1279779	79.649	99.65	0.794
pilD	Vibrio cholerae strain A1552	51.237	98.951	0.507
pilD	Vibrio campbellii strain DS40M4	49.826	100	0.5
pilD	Neisseria gonorrhoeae MS11	46.909	96.154	0.451