Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   K6J69_RS05215 Genome accession   NZ_AP018777
Coordinates   1051430..1053511 (+) Length   693 a.a.
NCBI ID   WP_110430585.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1046430..1058511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS05195 (CHBNIII6_09850) gap 1046676..1047695 (-) 1020 WP_014326504.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  K6J69_RS05200 (CHBNIII6_09860) gmk 1047946..1048572 (+) 627 WP_021035427.1 guanylate kinase -
  K6J69_RS05205 (CHBNIII6_09870) rpoZ 1048635..1048901 (+) 267 WP_110430587.1 DNA-directed RNA polymerase subunit omega -
  K6J69_RS05210 (CHBNIII6_09880) spoT 1049319..1051433 (+) 2115 WP_110430586.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  K6J69_RS05215 (CHBNIII6_09890) recG 1051430..1053511 (+) 2082 WP_110430585.1 ATP-dependent DNA helicase RecG Machinery gene
  K6J69_RS05220 (CHBNIII6_09900) murI 1053541..1054350 (+) 810 WP_110430584.1 glutamate racemase -
  K6J69_RS05225 (CHBNIII6_09910) lldD 1054561..1055706 (+) 1146 WP_021035422.1 FMN-dependent L-lactate dehydrogenase LldD -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78179.70 Da        Isoelectric Point: 8.4320

>NTDB_id=59934 K6J69_RS05215 WP_110430585.1 1051430..1053511(+) (recG) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MNLELLDAVPLTSLSGVGAAISNKLAKIGIHNLQDLLFHLPIRYEDRTRITPIANLRPEQYFTIEGIVQTCEVAFGRRPI
LSVSLSDGTSKIILRFFNFNAGMRNSFQVGVRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQ
NSLRKLTDQALALLDKVQIAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVR
LGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVAALSALTAIDNGKQV
ALMAPTEILAEQHANNFRRWFEPFGIEVGWLASKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQH
RFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRTEIVMRVKNACV
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKLQEKQDVMMRFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKISQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAELRVANLMRDRKMIPTVQFYAKSLIQKYPDVAESLIRRWLNNKEIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=59934 K6J69_RS05215 WP_110430585.1 1051430..1053511(+) (recG) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGAACCTTGAGCTTCTCGATGCCGTCCCTTTGACCAGCCTCTCTGGTGTTGGGGCTGCCATTTCTAATAAATTGGCTAA
AATCGGCATTCATAACCTGCAAGATTTACTCTTTCATTTACCTATTCGCTATGAAGATCGTACGCGAATTACGCCAATCG
CTAATCTTCGCCCCGAACAATATTTTACCATTGAAGGAATTGTACAAACCTGTGAAGTCGCTTTTGGTCGCCGTCCGATT
TTATCGGTCAGTTTGTCAGACGGTACATCGAAAATTATATTACGTTTTTTCAATTTTAATGCGGGGATGCGTAATAGTTT
TCAAGTAGGAGTGCGAGTAAAGGCTTTTGGCGAAGTGAAACGTGGTCGCCATATGCCAGAAATTCATCATCCAGAATATC
AAATTGTGCGAGATAACGCGCCTATTGTATTGGAAGAAACACTAACGCCGATTTATTCCACGACGGAAGGGCTAAAACAA
AATTCATTACGAAAATTAACGGATCAGGCTTTGGCATTACTCGACAAAGTTCAGATTGCAGAAATTTTGCCTAATGAATT
TAACCCACATCAATATAGCTTAAAAGAAGCATTGCGATTATTGCATCGTCCGCCGCCAGACATTTCATTAGAAATGTTAG
AGCAAGGTAAGCATCCTGCACAACAACGATTAATTTTTGAAGAATTATTGGCGCATAATCTTGCTATGCAAAAAGTGCGG
TTAGGAACGCAGCAATTTTCTGCTTTACCGCTACATTATCAAACAGATTTGAAACAGCGATTTTTAGCCACTTTGCCATT
TCAACCCACTAATGCGCAAAAGCGAGTCGTGTCGGATATTGAACAAGATCTTATCAAAGATTATCCGATGATGCGCTTAG
TGCAAGGGGATGTCGGCTCGGGAAAAACATTGGTTGCCGCATTGTCTGCTTTAACGGCAATTGATAACGGCAAACAAGTC
GCCTTAATGGCGCCAACAGAAATATTAGCAGAACAGCATGCGAATAATTTTCGACGTTGGTTTGAGCCTTTCGGTATTGA
AGTTGGTTGGTTGGCCAGTAAAGTAAAAGGAAAATCAAGACAAGCAGAGCTTGAAAAAATTAAAACTGGTGCGGTGCAAA
TGGTAGTGGGGACGCACGCTTTATTCCAAGAAGAAGTCGAGTTTTCTGACTTGGCATTAGTGATTATTGATGAACAACAT
CGTTTTGGCGTGCATCAACGATTAATGTTGCGTGAGAAAGGCGAAAAAGCGGGATTTTATCCCCATCAGTTAATTATGAC
TGCCACGCCGATACCAAGAACGTTAGCAATGACCGTATATGCCGATTTGGATACATCAATTATTGATGAATTGCCTCCCG
GTCGTACGCCGATAACAACCGTAGTGGTTTCTGAAGAACGCCGCACTGAAATTGTGATGCGTGTAAAAAACGCTTGTGTT
AATGAAAAACGTCAAGCCTATTGGGTGTGTACGTTAATTGATGAATCAGAGGTTTTAGAAGCTCAAGCTGCCGAAGCGAT
TTGGGAAGATTTAACGAAAGCATTACCTATGTTAAATATTGGTTTAGTTCACGGGAGAATGAAACTACAAGAAAAACAAG
ATGTTATGATGCGTTTTAAAAATGCAGAATTGGATTTATTGGTCGCGACGACAGTAATTGAAGTGGGTGTTGATGTTCCG
AATGCGAGTTTGATGATTATCGAAAATGCAGAGCGTTTAGGTTTATCGCAACTTCATCAGTTACGAGGGCGTGTTGGTCG
AGGCAGTACGGCTTCTTTTTGTGTACTAATGTATAAACCTCCACTCGGTAAAATTTCGCAAAAACGTTTGCAAGTGCTAC
GAGATAGCCAAGATGGATTTGTTATTTCGGAAAAAGACTTAGAAATCCGTGGACCAGGTGAAGTGCTTGGAACGAAACAA
ACAGGCATTGCTGAATTGCGAGTAGCAAATTTAATGCGAGATAGAAAAATGATACCAACGGTGCAATTTTATGCGAAATC
GCTTATCCAAAAATACCCTGATGTGGCAGAAAGTCTAATCCGCCGCTGGCTCAATAATAAAGAAATCTACTCGAACGCTT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(273-405)

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.63

97.403

0.483
  recG Bacillus subtilis subsp. subtilis str. 168

39.104

96.681

0.378
  recG/mmsA Streptococcus pneumoniae R6

39.269

94.805

0.372
  recG/mmsA Streptococcus pneumoniae R36A

39.269

94.805

0.372

Multiple sequence alignment