Detailed information NTG0598636

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: K5K95_RS04355
• Genome accession: NZ_CP081946
• Coordinates: 954641..955987 (+)
• Length: 448 a.a.
• NCBI ID: WP_222588507.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DR48
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 949641..960987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5K95_RS04330 (K5K95_04330)	pgeF	949861..950586 (-)	726	WP_222588504.1	peptidoglycan editing factor PgeF	-
K5K95_RS04335 (K5K95_04335)	rluD	950583..951545 (-)	963	WP_007942311.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
K5K95_RS04340 (K5K95_04340)	-	951697..952719 (+)	1023	WP_222588505.1	outer membrane protein assembly factor BamD	-
K5K95_RS04345 (K5K95_04345)	-	952832..953065 (+)	234	WP_208671394.1	PP0621 family protein	-
K5K95_RS04350 (K5K95_04350)	pilS	953055..954644 (+)	1590	WP_222588506.1	sensor histidine kinase	Regulator
K5K95_RS04355 (K5K95_04355)	pilR	954641..955987 (+)	1347	WP_222588507.1	sigma-54-dependent transcriptional regulator	Regulator
K5K95_RS04360 (K5K95_04360)	thiO	956046..957146 (-)	1101	WP_222588508.1	glycine oxidase ThiO	-
K5K95_RS04365 (K5K95_04365)	-	957200..957601 (-)	402	WP_222588509.1	type IV pilin protein	-
K5K95_RS04370 (K5K95_04370)	-	957616..960708 (-)	3093	WP_222588510.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49775.12 Da
• Isoelectric Point: 6.5117

>NTDB_id=598636 K5K95_RS04355 WP_222588507.1 954641..955987(+) (pilR) [Pseudomonas sp. DR48]
MNISPRPKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLGREAFDLCLTDMRLPDGTGLELVHFIQQRYPHVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSSALRLSAAGGVSTAIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRANQPFIAVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAANSGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIELLA
SHVLKRLAAGSGQPAVKLHSLALDALKGYRFPGNVRELENVLERAHTLCENQQIEASDLRLADGNCTAESGVPDLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=598636 K5K95_RS04355 WP_222588507.1 954641..955987(+) (pilR) [Pseudomonas sp. DR48]
TTGAATATCAGCCCACGGCCGAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGTGCCCGTAACCTTGGCGAAGCCCAAGCCTTGCTGGGCCGGGAAGCATTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTTGAGCTGGTGCATTTCATCCAGCAGCGTTATCCGCACGTACCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCGATCAACGCGCTCAAGGCCGGTGCGTTCGACTTTCTGACCAA
GCCGGTCGACCTCACTCGCCTGCGCGAACTGGTCAGCAGTGCCTTGCGATTGTCAGCGGCGGGCGGCGTCAGCACAGCCA
TCGATCGCCGACTCCTGGGTGATTCATTGCCCATGCGCAACCTGCGCAAACAAATCGACAAACTCGCTCGCAGCCAGGCC
CCCGTGTACATCAGCGGTGAATCCGGCAGCGGCAAGGAACTGGTCGCACGGCTGATTCATGAACAAGGCCCGCGAGCCAA
TCAGCCGTTCATTGCGGTGAACTGCGGGGCCATTCCTTCGGAGCTGATGGAAAGCGAATTCTTCGGCCATCGCAAAGGCA
GCTTCAGCGGCGCTATCGAGGACAAACCCGGGTTATTTCAGGCCGCCAATAGCGGCACTCTGTTCCTTGATGAAGTGGCT
GATTTGCCGTTGGCCATGCAGGTCAAACTGCTTCGAGCCATACAGGAAAAAGCCGTTCGCAGCGTCGGCGGGCAACAGGA
AACCGTCGTCGATGTGCGCATCCTGTGCGCCACCCACAAAGACCTCGATGCCGAAGTCGCCGCTGAACGCTTTCGCCAGG
ACTTGTACTACCGGTTGAACGTGATCGAGCTACGCGTACCGCCTTTGCGTGAACGCCGTGACGATATCGAACTGTTGGCC
AGCCATGTGCTCAAGCGTCTGGCCGCCGGCAGCGGTCAACCTGCCGTAAAACTCCACTCGCTCGCCCTCGACGCGCTGAA
AGGCTACCGTTTTCCGGGCAACGTGCGAGAGCTGGAGAACGTGCTGGAGCGGGCTCACACCCTGTGCGAGAACCAGCAGA
TCGAAGCCAGCGACCTGCGCCTGGCCGACGGTAATTGCACCGCAGAGAGCGGTGTGCCGGACCTGACCCAGATCGATAAC
CTGGAAGACTATCTGGAAAATGTCGAACGTAAACTCATCCTCCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCTCAGCGGTTGAATTTGTCATTCCGGTCGATGCGTTACCGACTGAAAAAACTGGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.104	98.884	0.772
pilR	Acinetobacter baumannii strain A118	49.244	100	0.509