Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   K5K95_RS04350 Genome accession   NZ_CP081946
Coordinates   953055..954644 (+) Length   529 a.a.
NCBI ID   WP_222588506.1    Uniprot ID   -
Organism   Pseudomonas sp. DR48     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 948055..959644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K95_RS04330 (K5K95_04330) pgeF 949861..950586 (-) 726 WP_222588504.1 peptidoglycan editing factor PgeF -
  K5K95_RS04335 (K5K95_04335) rluD 950583..951545 (-) 963 WP_007942311.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K5K95_RS04340 (K5K95_04340) - 951697..952719 (+) 1023 WP_222588505.1 outer membrane protein assembly factor BamD -
  K5K95_RS04345 (K5K95_04345) - 952832..953065 (+) 234 WP_208671394.1 PP0621 family protein -
  K5K95_RS04350 (K5K95_04350) pilS 953055..954644 (+) 1590 WP_222588506.1 sensor histidine kinase Regulator
  K5K95_RS04355 (K5K95_04355) pilR 954641..955987 (+) 1347 WP_222588507.1 sigma-54-dependent transcriptional regulator Regulator
  K5K95_RS04360 (K5K95_04360) thiO 956046..957146 (-) 1101 WP_222588508.1 glycine oxidase ThiO -
  K5K95_RS04365 (K5K95_04365) - 957200..957601 (-) 402 WP_222588509.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58732.46 Da        Isoelectric Point: 7.0066

>NTDB_id=598635 K5K95_RS04350 WP_222588506.1 953055..954644(+) (pilS) [Pseudomonas sp. DR48]
MLAETSSPGSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLAFAKDDLLRSGSWLYLVLNILLVVFWENTRRPAQLF
TLAWVDVLLLCGLFYAAGGVGSAIGNLLIVSVAISNTLLRGRIGLLIAAVAALGIVGFSFLLSFSQPTSPGDYLQVGTLG
ALCFAAALLVQGLTRRLEVSENLAQQRASEVVGLEALNALILQRMRTGILVLDDQRRVQLANHSALTLLGQKNLDGQLID
DYSPALVERLQLWLNNPTLRPQSLKIADSGLELQPSFIALDQSPNHRTLVFLEDLAQISQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQAVPQRLDLKPWLEHFVAETRERANER
QHIHLHIGAGDFNTLMDPNQLTQILDNLLRNAWRHSAMNHDQAQVWLELFVDAESQLPVLEVVDDGPGVAPDQQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=598635 K5K95_RS04350 WP_222588506.1 953055..954644(+) (pilS) [Pseudomonas sp. DR48]
GTGCTCGCTGAGACGTCCAGTCCCGGCAGCAAACAGGCCCAGCGACTGCTGCGCCTTTACCATCTCTACCGATTAAGCGT
CGGCATCACCTTGGTGTTGCTGATTTCCAGCAACATGGACAACCAGTTGCTGGCCTTCGCCAAGGACGACTTGCTGCGCA
GCGGCAGCTGGTTGTACCTGGTGCTGAATATCTTGCTGGTGGTGTTCTGGGAGAACACCCGGCGGCCGGCACAGCTTTTC
ACCCTGGCATGGGTCGATGTCCTGCTGCTGTGCGGATTGTTCTATGCCGCCGGCGGTGTCGGCAGCGCCATCGGCAACCT
GCTGATTGTGTCGGTGGCCATCAGCAATACGCTGCTGCGCGGGCGTATCGGGCTGTTGATTGCCGCCGTCGCGGCCCTTG
GCATCGTCGGTTTCAGTTTTCTCCTGAGCTTCAGTCAACCGACCAGCCCTGGCGATTACTTGCAAGTGGGCACGCTCGGT
GCGTTGTGTTTTGCCGCGGCGCTGTTGGTGCAAGGCCTGACGCGGCGCCTGGAAGTCAGCGAAAACCTCGCCCAGCAGCG
AGCCAGTGAAGTGGTTGGCCTCGAAGCGCTCAACGCATTGATCCTGCAACGCATGCGTACCGGCATTCTGGTGCTGGACG
ACCAACGGCGGGTACAGCTGGCCAATCACAGCGCCTTGACCTTGCTGGGGCAGAAAAACCTCGACGGACAACTGATCGAC
GACTACTCGCCAGCATTGGTCGAGCGCCTTCAGCTATGGCTCAACAATCCGACGTTGCGACCGCAAAGCCTGAAGATTGC
CGACAGCGGCCTTGAGCTGCAACCCAGTTTCATTGCCCTGGACCAAAGCCCGAACCATCGAACCCTGGTGTTTCTCGAAG
ACCTCGCCCAGATCTCGCAACAGGCACAGCAACTGAAGCTCGCGGCCCTAGGCCGTCTGACCGCCGGTATCGCCCATGAA
ATCCGTAACCCGCTCGGTGCCATTAGTCATGCCGCGCAATTGCTGCGCGAGTCTGAGGAACTGAACAGCGCGGACCGGCG
TCTGACGCAAATCATCCAAGACCACTCTCAGCGAATGAATCGGGTTATCGAAAACGTCCTGCAATTGTCCCGCCGCCAGC
AAGCCGTGCCACAAAGGCTCGATCTGAAGCCGTGGCTGGAGCATTTCGTCGCCGAAACCCGCGAAAGAGCCAACGAGCGC
CAGCACATCCATCTGCACATCGGCGCGGGCGACTTCAATACCTTGATGGACCCCAATCAACTGACCCAGATTCTCGACAA
TCTGTTGCGCAATGCCTGGCGCCACAGCGCCATGAATCATGACCAGGCGCAGGTCTGGCTTGAGTTGTTCGTCGACGCCG
AGAGCCAGCTACCCGTGCTCGAAGTCGTGGACGACGGCCCCGGCGTGGCGCCGGATCAACAGACGCATTTGTTCGAACCG
TTCTTCACCACCAGTAGCCAGGGTACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605