Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K5K95_RS00780 Genome accession   NZ_CP081946
Coordinates   175820..178054 (-) Length   744 a.a.
NCBI ID   WP_222588003.1    Uniprot ID   -
Organism   Pseudomonas sp. DR48     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 170820..183054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K95_RS00745 (K5K95_00745) murB 171198..172217 (-) 1020 WP_222587999.1 UDP-N-acetylmuramate dehydrogenase -
  K5K95_RS00750 (K5K95_00750) - 172214..172678 (-) 465 WP_090186798.1 low molecular weight protein-tyrosine-phosphatase -
  K5K95_RS00755 (K5K95_00755) kdsB 172678..173442 (-) 765 WP_222588000.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5K95_RS00760 (K5K95_00760) - 173439..173624 (-) 186 WP_090186803.1 Trm112 family protein -
  K5K95_RS00765 (K5K95_00765) lpxK 173648..174658 (-) 1011 WP_222588001.1 tetraacyldisaccharide 4'-kinase -
  K5K95_RS00770 (K5K95_00770) - 174658..175086 (-) 429 WP_208669422.1 ExbD/TolR family protein -
  K5K95_RS00775 (K5K95_00775) exbB 175083..175721 (-) 639 WP_222588002.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K5K95_RS00780 (K5K95_00780) comA 175820..178054 (-) 2235 WP_222588003.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5K95_RS00785 (K5K95_00785) - 178191..178706 (+) 516 WP_222588004.1 DUF2062 domain-containing protein -
  K5K95_RS00790 (K5K95_00790) - 178877..179656 (-) 780 WP_222588005.1 ABC transporter permease -
  K5K95_RS00795 (K5K95_00795) - 179653..180585 (-) 933 WP_222588006.1 ABC transporter ATP-binding protein -
  K5K95_RS00800 (K5K95_00800) - 180718..181341 (-) 624 WP_222588007.1 glutathione S-transferase family protein -
  K5K95_RS00805 (K5K95_00805) - 181385..182044 (-) 660 WP_222588008.1 transglutaminase-like domain-containing protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81937.17 Da        Isoelectric Point: 10.0091

>NTDB_id=598629 K5K95_RS00780 WP_222588003.1 175820..178054(-) (comA) [Pseudomonas sp. DR48]
MRTGMMALATGLLALRFLPELPPVWVWMLLPVVGLMLLPFRTYALAFFVFGFSWACANAQWALDDRLPLKLDGETRWVEG
RVTGLPQNADGVVRFELSDSQSRRTRLPRHLRLAWYDGPAVNAGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKAGQKLADAQWAWRDNIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPNRLPWLPWACALAFAAALGYGLLAGFEVPVRRACVMIGLILLWRLRFRHLGAWWPLLLALDAVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISISGPLVNLLAVPWISLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFKGLALMAGRLPAWVPAAIPLWSWALGTLGAIVLLLPKGVPMRPLGWPLLLLLV
FPPRELVPAGMAEIWQLDVGQGLAILVRTRHHTLLYDTGPRFGDFDLGERVVLPSLRKLGVDGLDMMLISHPDADHAGGA
RAVANGLPVTRVLGGDHQALPAELQAEACESGRRWTWDGVNFQLWQWAAASDSNQKSCVLQIEANGERLLLTGDIDVAAE
RALLDSPLAVPTDWLQSPHHGSRSSSSMALLAVLEPHTVLISRGQGNSFGHPHPTVMARYQKRGMAIYDSADHGAIRLQL
GRFKSPWSMRLQRRFWRDSPPLSQ

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=598629 K5K95_RS00780 WP_222588003.1 175820..178054(-) (comA) [Pseudomonas sp. DR48]
ATGCGCACAGGGATGATGGCGCTGGCGACGGGTTTGCTGGCGTTGCGTTTTTTACCGGAATTACCGCCGGTCTGGGTTTG
GATGTTGCTGCCTGTGGTGGGGCTGATGCTGCTGCCGTTTCGCACGTACGCGTTGGCATTCTTTGTGTTCGGCTTCAGTT
GGGCCTGCGCGAATGCACAGTGGGCGCTGGATGATCGTCTGCCGCTGAAGCTTGATGGTGAGACTCGCTGGGTCGAAGGG
CGGGTGACAGGGTTGCCGCAGAATGCCGACGGTGTGGTGCGTTTTGAACTGAGTGACAGTCAATCGCGACGCACCCGCCT
GCCCAGGCATTTACGCCTGGCCTGGTACGACGGCCCCGCCGTCAACGCCGGCGAACGGTGGCGGCTGGCAGTCAAGTTGA
AGCGTCCCGCCGGGCTGCTCAATCCGCATGCGTTCGACTACGACGCCTGGTTGCTGGCGCAACGCATCGGTGCCACCGGG
ACGGTCAAGGCCGGTCAAAAGCTTGCCGATGCTCAATGGGCCTGGCGCGACAACATTCGTCAACGCCTGCAGGCCGTGGA
TGCACAAGGTCGAACGGGGGCGCTGACGGCCTTGGTGCTGGGGGATGGCGCCGGGCTGAGTCGCGAGGATTGGCAAGTCC
TGCAAGACACCGGCACCGTACATCTGTTGGTGATTTCCGGGCAACACATCGGTTTGCTCGCGGGATTGGTGTATCTGCTG
ATCGCCGGGCTGGCCCGTTATGGCCTATGGCCGAATCGTTTGCCCTGGCTGCCGTGGGCGTGCGCGCTGGCGTTCGCCGC
CGCGCTCGGTTACGGGCTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGCGCGTGCGTGATGATCGGCCTGATACTGTTAT
GGCGGCTGCGGTTTCGTCATCTCGGTGCGTGGTGGCCGCTATTGCTGGCGCTTGATGCGGTGTTGCTGCTGGACCCGCTG
GCCAGTCTGCAACCGGGTTTCTGGTTGTCTTTCGCCGCAGTGGCCGTGCTGATCTTCACTTTTGGTGGACGGCTCGGGCC
TTGGCGATGGTGGCAAACCTGGACCCGCGCGCAATGGCTGATCGCGATCGGTTTATGTCCGTTGCTGCTGGTGCTCGGCT
TACCGATCAGCATCAGTGGCCCGCTGGTCAACTTGCTGGCGGTGCCCTGGATCAGTCTGGTTGTGCTGCCACCGGCCTTG
CTGGGCACGCTGCTGTTGCCAGTGCCTTATGTGGGCGAGGGGTTGTTGTGGCTGGCGGGCGGTCTGATTGACTGGCTGTT
CAAGGGACTGGCGTTGATGGCAGGCCGATTGCCTGCTTGGGTGCCGGCAGCGATCCCGCTGTGGAGTTGGGCGCTTGGCA
CGCTGGGGGCCATTGTTCTCTTGCTGCCCAAAGGTGTGCCGATGCGGCCGCTGGGTTGGCCGTTGCTGTTGCTGCTGGTT
TTTCCACCTCGAGAACTGGTGCCTGCCGGCATGGCTGAAATCTGGCAACTGGATGTCGGCCAAGGATTGGCCATTCTCGT
GCGCACGCGTCATCACACCTTGTTGTACGACACCGGCCCGCGTTTTGGCGATTTCGACCTGGGGGAGCGGGTGGTGCTGC
CATCGTTGCGCAAACTGGGGGTGGACGGGCTCGATATGATGCTCATCAGTCACCCCGACGCCGATCACGCCGGCGGCGCA
CGAGCGGTGGCCAACGGATTGCCGGTGACCCGGGTCCTCGGCGGCGATCATCAGGCGCTGCCGGCCGAGTTACAGGCCGA
AGCCTGTGAAAGTGGTCGGCGATGGACCTGGGACGGCGTGAACTTCCAGCTCTGGCAATGGGCTGCCGCCAGCGACAGCA
ATCAGAAATCCTGCGTCTTGCAGATCGAAGCCAACGGTGAGCGATTGCTGTTGACCGGCGATATAGATGTCGCCGCCGAA
CGGGCGCTGCTCGACAGTCCGCTCGCCGTGCCCACCGATTGGCTGCAATCACCGCACCACGGCAGCCGCAGTTCGTCGTC
AATGGCGCTACTGGCCGTGCTTGAACCCCATACGGTGCTGATCTCCCGTGGCCAGGGCAATTCCTTTGGCCATCCACATC
CAACGGTCATGGCGCGCTATCAAAAACGTGGCATGGCGATCTATGACAGCGCCGACCACGGCGCCATTCGTCTGCAACTC
GGACGCTTCAAATCGCCCTGGTCGATGCGTCTGCAACGGCGTTTCTGGCGCGATTCGCCGCCGCTCAGCCAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.5

96.774

0.605
  comA Ralstonia pseudosolanacearum GMI1000

33.252

100

0.367