Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K5K95_RS00775 Genome accession   NZ_CP081946
Coordinates   175083..175721 (-) Length   212 a.a.
NCBI ID   WP_222588002.1    Uniprot ID   -
Organism   Pseudomonas sp. DR48     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 170083..180721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K95_RS00740 (K5K95_00740) - 170481..170951 (-) 471 WP_222587998.1 (2Fe-2S)-binding protein -
  K5K95_RS00745 (K5K95_00745) murB 171198..172217 (-) 1020 WP_222587999.1 UDP-N-acetylmuramate dehydrogenase -
  K5K95_RS00750 (K5K95_00750) - 172214..172678 (-) 465 WP_090186798.1 low molecular weight protein-tyrosine-phosphatase -
  K5K95_RS00755 (K5K95_00755) kdsB 172678..173442 (-) 765 WP_222588000.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5K95_RS00760 (K5K95_00760) - 173439..173624 (-) 186 WP_090186803.1 Trm112 family protein -
  K5K95_RS00765 (K5K95_00765) lpxK 173648..174658 (-) 1011 WP_222588001.1 tetraacyldisaccharide 4'-kinase -
  K5K95_RS00770 (K5K95_00770) - 174658..175086 (-) 429 WP_208669422.1 ExbD/TolR family protein -
  K5K95_RS00775 (K5K95_00775) exbB 175083..175721 (-) 639 WP_222588002.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K5K95_RS00780 (K5K95_00780) comA 175820..178054 (-) 2235 WP_222588003.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5K95_RS00785 (K5K95_00785) - 178191..178706 (+) 516 WP_222588004.1 DUF2062 domain-containing protein -
  K5K95_RS00790 (K5K95_00790) - 178877..179656 (-) 780 WP_222588005.1 ABC transporter permease -
  K5K95_RS00795 (K5K95_00795) - 179653..180585 (-) 933 WP_222588006.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23138.35 Da        Isoelectric Point: 7.4246

>NTDB_id=598628 K5K95_RS00775 WP_222588002.1 175083..175721(-) (exbB) [Pseudomonas sp. DR48]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRAHSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMTTNAAVLAGGISKALITTA
SGLIVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKKA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=598628 K5K95_RS00775 WP_222588002.1 175083..175721(-) (exbB) [Pseudomonas sp. DR48]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCAATCGTCGC
CGAGCGTCTCTGGACCCTGCGTGCCAGCCGTGTAACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTATGGATCAAGGACA
AGCAACTCAACAAAGAAAAACTCAAGGAACTGCGCGCCCACTCACCGTTGGGCGAGATCCTGGCAGCCGGCCTCGCCAAC
TCCAAACATGGTCGAGAGATCATGAAAGAGTGCATCGAAGAAGCCGCTGCGCGGGTGATTCATGAGCTTGAACGCTACAT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCTTTGTTGGGGTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCACGGGCATGACCACCAATGCCGCAGTGCTGGCCGGCGGTATTTCCAAAGCCCTGATCACCACGGCT
TCGGGCCTGATCGTCGGTATCCCGTCGGTCTTCTTCCACCGGTTCCTGCAACGGCGCATCGATGAGCTGGTGGTGGGGAT
GGAGCAGGAAGCGATCAAACTGGTCGAGGTCGTGCAGGGTGACCGTGACGTGGACCTGTCCGAGGGCAAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.81

99.057

0.83