Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K5K89_RS13205 Genome accession   NZ_CP081944
Coordinates   2896955..2899180 (+) Length   741 a.a.
NCBI ID   WP_261401104.1    Uniprot ID   -
Organism   Pseudomonas sp. DR208     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2891955..2904180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K89_RS13190 (K5K89_13190) - 2894222..2894950 (+) 729 WP_222541569.1 response regulator transcription factor -
  K5K89_RS13195 (K5K89_13195) - 2894937..2896307 (+) 1371 WP_222541570.1 sensor histidine kinase -
  K5K89_RS13200 (K5K89_13200) - 2896304..2896819 (-) 516 WP_222541571.1 DUF2062 domain-containing protein -
  K5K89_RS13205 (K5K89_13205) comA 2896955..2899180 (+) 2226 WP_261401104.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5K89_RS13210 (K5K89_13210) exbB 2899264..2899899 (+) 636 WP_058425437.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K5K89_RS13215 (K5K89_13215) - 2899896..2900324 (+) 429 WP_058425436.1 ExbD/TolR family protein -
  K5K89_RS13220 (K5K89_13220) lpxK 2900324..2901334 (+) 1011 WP_222541572.1 tetraacyldisaccharide 4'-kinase -
  K5K89_RS13225 (K5K89_13225) - 2901359..2901544 (+) 186 WP_003174668.1 Trm112 family protein -
  K5K89_RS13230 (K5K89_13230) kdsB 2901541..2902305 (+) 765 WP_222541573.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K5K89_RS13235 (K5K89_13235) - 2902305..2902769 (+) 465 WP_071491863.1 low molecular weight protein-tyrosine-phosphatase -
  K5K89_RS13240 (K5K89_13240) murB 2902766..2903785 (+) 1020 WP_092245147.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80765.91 Da        Isoelectric Point: 10.9243

>NTDB_id=598615 K5K89_RS13205 WP_261401104.1 2896955..2899180(+) (comA) [Pseudomonas sp. DR208]
MKTGMCAFALGLLALRFLPALPPMGWLVAWPVLALMLLPFRTYPLAFFLLGLSWACLSAQWALDDRLMPALDGQTRWLEG
RVIGLPRQTGEGVRFELADSRSRNARLPKRIRVSWRGGPPVRSGERWRLAVTLKRPTGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPARNAWRDSVRQRLLAVDAQGREAGLVALVLGDGSGLAAADWHVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFSAALGYGWLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLVAVPWISLVVLPLAL
SGTALLPLPFIGEGLLWLAGGALDGLFRGLAWLAGHMPAWIPAQVPLVYWLVSLLGAVLLLLPNGVPFRVLGWPMLLLAV
FPARELVPHGQMEVVQLDVGQGQSLILRTRHHALLYDAGPRTGTFDLGARVVLPSLRKLGVRALDLMLLSHADADHAGGA
AAIAKGIPIKRVVGGETDGLPAFIGTQPCVSGERWTWDGVTFELWQWPGAISGNAKSCVLQVQANGERLLLTGDIDREAE
QAMLASPLAVPTEWLQAPHHGSRSSSSWAFVERLSPRNVLISRGRGNAFGHPHPQVLERYQRLGSQVYDSAEQGAVRVQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=598615 K5K89_RS13205 WP_261401104.1 2896955..2899180(+) (comA) [Pseudomonas sp. DR208]
ATGAAGACAGGGATGTGCGCGTTTGCGCTGGGGTTGCTGGCCCTGCGTTTTTTGCCGGCGTTGCCGCCTATGGGCTGGCT
GGTTGCCTGGCCGGTGCTGGCGTTGATGTTGTTGCCGTTTCGTACCTACCCACTGGCGTTTTTCCTGCTGGGGCTGAGTT
GGGCATGCCTCAGCGCACAGTGGGCGCTGGATGATCGTCTGATGCCTGCCCTGGATGGCCAGACGCGCTGGCTGGAGGGC
CGGGTGATCGGGTTGCCGCGACAGACGGGCGAAGGTGTGCGCTTCGAACTGGCCGATAGCCGGTCGCGCAATGCCCGCTT
ACCCAAACGCATCCGCGTGTCCTGGCGTGGCGGGCCGCCGGTGCGCAGCGGTGAACGTTGGCGCCTGGCGGTTACCCTCA
AGCGTCCGACCGGGTTGCTGAATTTCCACGGGTTTGATCAGGAAGCCTGGCTGTTGGCCCAACGCATCGGCGCCACGGGC
TCGGTCAAGGATGGCGAGCGCCTGGCGCCGGCCCGCAATGCCTGGCGCGACAGCGTGCGTCAGCGCCTGCTGGCGGTGGA
TGCCCAAGGCCGGGAAGCAGGCCTGGTTGCCCTGGTACTGGGCGACGGCTCAGGGTTGGCCGCTGCCGACTGGCACGTGT
TGCAGGACACGGGCACCGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCGGGTTTGATCTATGGGCTG
ATCGCCGGGTTGGCCCGCTACGGTTGCTGGCCGCGAACCTGGCCGTGGTTGCCCTGGGCGTGTGGCCTGGCGTTCAGCGC
TGCGTTGGGCTACGGCTGGCTCGCAGGGTTTGGCGTGCCGGTGCAACGGGCTTGTGTGATGGTCGGGTTGGTGTTGTTGT
GGCGGCTGCGCTTCCGGCATCTGGGGCTGTGGTGGCCGTTGCTGCTGGCGCTCAATGGGGTGCTGGTGCTGGAGCCGTTG
GCCAGCTTGCAGCCCGGGTTCTGGTTGTCGTTTGCGGCGGTGGCGGTGCTGATTCTGGCGTTTGGTGGGCGGTTGGGGCC
GTGGAGCCTGTGGCAGGCATGGACCCGACCGCAGTGGCTGATTGCCATTGGGCTGTTTCCGGTGTTGTTGGTGTTGGGAC
TGCCCATCAGCCTGAGCGCACCGCTGGCCAACCTGGTGGCTGTGCCGTGGATCAGCCTGGTGGTGTTGCCGCTGGCGCTA
TCGGGGACCGCATTGCTGCCATTGCCATTTATTGGCGAAGGTCTTCTGTGGCTGGCGGGCGGCGCTCTGGATGGTTTGTT
CAGAGGGCTGGCGTGGCTCGCCGGACACATGCCGGCGTGGATCCCGGCGCAAGTACCATTGGTTTACTGGCTGGTGAGTC
TGCTGGGTGCCGTGTTGCTACTGCTGCCCAACGGCGTGCCGTTTCGCGTATTAGGCTGGCCAATGCTGTTGTTGGCAGTG
TTCCCTGCGCGAGAACTGGTGCCCCACGGGCAGATGGAGGTGGTGCAGTTGGACGTGGGGCAGGGGCAGTCGCTGATTCT
GCGCACGCGCCACCATGCATTGCTTTACGACGCCGGACCGCGCACCGGAACCTTTGATCTGGGCGCGCGGGTGGTGCTCC
CGTCGTTGCGAAAACTCGGGGTGAGGGCATTGGATCTGATGCTGCTCAGTCACGCCGATGCGGATCATGCCGGCGGCGCG
GCGGCGATTGCCAAGGGCATACCGATCAAGCGCGTGGTGGGCGGGGAAACCGATGGGTTGCCGGCATTTATCGGTACGCA
ACCTTGCGTCAGCGGCGAGCGATGGACCTGGGACGGGGTAACGTTCGAACTCTGGCAGTGGCCAGGTGCTATCAGTGGTA
ACGCAAAGTCCTGCGTGTTGCAGGTGCAGGCCAATGGCGAGCGCCTGTTGCTGACCGGCGACATCGACCGCGAAGCCGAA
CAGGCCATGCTCGCGTCGCCTCTGGCGGTGCCCACCGAGTGGCTGCAGGCGCCCCACCATGGCAGTCGCAGCTCTTCGTC
CTGGGCGTTTGTCGAGCGGCTCTCCCCCCGTAATGTGCTGATCTCGCGGGGGCGCGGCAATGCGTTCGGCCATCCCCATC
CGCAGGTGCTGGAACGTTACCAGCGGCTGGGCAGCCAAGTGTATGACAGCGCCGAACAGGGGGCCGTGCGTGTGCAGCTG
GGAGCATTCGCGCCACCGGTCGTTGCGCGCAGTCAACGAAGGTTCTGGCGCGAGCGCTTACCCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.972

97.166

0.592
  comA Ralstonia pseudosolanacearum GMI1000

35.634

100

0.383